############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data quantiseqr ### ############################################################################## ############################################################################## * checking for file ‘quantiseqr/DESCRIPTION’ ... OK * preparing ‘quantiseqr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘using_quantiseqr.Rmd’ using rmarkdown Quitting from using_quantiseqr.Rmd:172-187 [ex2-pbmcs-retrieve] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `read.table()`: ! 'file' must be a character string or connection --- Backtrace: ▆ 1. └─utils::read.table(tpm_location, header = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'using_quantiseqr.Rmd' failed with diagnostics: 'file' must be a character string or connection --- failed re-building ‘using_quantiseqr.Rmd’ SUMMARY: processing the following file failed: ‘using_quantiseqr.Rmd’ Error: Vignette re-building failed. Execution halted