############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data oligo ### ############################################################################## ############################################################################## * checking for file ‘oligo/DESCRIPTION’ ... OK * preparing ‘oligo’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘oligo’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -c DABG.c -o DABG.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ParserGzXYS.c -o ParserGzXYS.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ParserXYS.c -o ParserXYS.o ParserXYS.c: In function ‘xys_header_field’: ParserXYS.c:148:5: error: implicit declaration of function ‘error’; did you mean ‘perror’? [-Wimplicit-function-declaration] 148 | error("Error reading from %s.\n", currentFile); | ^~~~~ | perror make: *** [/home/biocbuild/R/R-4.4.3/etc/Makeconf:195: ParserXYS.o] Error 1 ERROR: compilation failed for package ‘oligo’ * removing ‘/home/biocbuild/tmp/RtmpehEVqr/Rinst13c2356cf4480/oligo’ ----------------------------------- ERROR: package installation failed