##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r iPath -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data iPath
###
##############################################################################
##############################################################################


* checking for file 'iPath/DESCRIPTION' ... OK
* preparing 'iPath':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'iPath.Rmd' using rmarkdown

Quitting from iPath.Rmd:82-85 [cal_iES2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `serialize()`:
! error writing to connection
---
Backtrace:
     ▆
  1. └─iPath::iES_cal2(Y = prad_exprs, GSDB = GSDB_example)
  2.   ├─BiocParallel::bplapply(seq_len(npats), FUN = bp_fun, BPPARAM = tmpParam)
  3.   └─BiocParallel::bplapply(seq_len(npats), FUN = bp_fun, BPPARAM = tmpParam)
  4.     └─BiocParallel:::.bpinit(...)
  5.       ├─BiocParallel::bpstop(BPPARAM)
  6.       └─BiocParallel::bpstop(BPPARAM)
  7.         └─BiocParallel::.bpstop_impl(x)
  8.           └─BiocParallel:::.bpstop_nodes(x)
  9.             ├─BiocParallel::.manager_send_all(manager, .DONE())
 10.             └─BiocParallel::.manager_send_all(manager, .DONE())
 11.               ├─BiocParallel::.send_all(manager$backend, value)
 12.               └─BiocParallel::.send_all(manager$backend, value)
 13.                 ├─BiocParallel::.send_to(backend, node, value)
 14.                 └─BiocParallel::.send_to(backend, node, value)
 15.                   ├─parallel:::sendData(backend[[node]], value)
 16.                   └─parallel:::sendData.SOCKnode(backend[[node]], value)
 17.                     └─base::serialize(data, node$con)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'iPath.Rmd' failed with diagnostics:
error writing to connection
--- failed re-building 'iPath.Rmd'

SUMMARY: processing the following file failed:
  'iPath.Rmd'

Error: Vignette re-building failed.
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCKnode -> serialize