############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cellbaseR ### ############################################################################## ############################################################################## * checking for file ‘cellbaseR/DESCRIPTION’ ... OK * preparing ‘cellbaseR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cellbaseR.Rmd’ using rmarkdown Quitting from cellbaseR.Rmd:56-67 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! Timeout was reached [ws.zettagenomics.com]: Operation timed out after 10000 milliseconds with 97906 bytes received --- Backtrace: ▆ 1. ├─cellbaseR::getGene(object = cb, ids = genes, resource = "info") 2. ├─cellbaseR::getGene(object = cb, ids = genes, resource = "info") 3. │ └─cellbaseR:::fetchCellbase(...) 4. │ └─cellbaseR:::callREST2(grls = grls) 5. │ └─httr::GET(...) 6. │ └─httr:::request_perform(req, hu$handle$handle) 7. │ ├─httr:::request_fetch(req$output, req$url, handle) 8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle) 9. │ └─curl::curl_fetch_memory(url, handle = handle) 10. └─curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cellbaseR.Rmd' failed with diagnostics: Timeout was reached [ws.zettagenomics.com]: Operation timed out after 10000 milliseconds with 97906 bytes received --- failed re-building ‘cellbaseR.Rmd’ SUMMARY: processing the following file failed: ‘cellbaseR.Rmd’ Error: Vignette re-building failed. Execution halted