############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCy3 ### ############################################################################## ############################################################################## * checking for file ‘RCy3/DESCRIPTION’ ... OK * preparing ‘RCy3’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Cancer-networks-and-data.Rmd’ using rmarkdown Error: processing vignette 'Cancer-networks-and-data.Rmd' failed with diagnostics: pandoc document conversion failed with error 10 --- failed re-building ‘Cancer-networks-and-data.Rmd’ --- re-building ‘Custom-Graphics.Rmd’ using rmarkdown --- finished re-building ‘Custom-Graphics.Rmd’ --- re-building ‘Cytoscape-and-NDEx.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-NDEx.Rmd’ --- re-building ‘Cytoscape-and-graphNEL.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-graphNEL.Rmd’ --- re-building ‘Cytoscape-and-iGraph.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-iGraph.Rmd’ --- re-building ‘Filtering-Networks.Rmd’ using rmarkdown --- finished re-building ‘Filtering-Networks.Rmd’ --- re-building ‘Group-nodes.Rmd’ using rmarkdown --- finished re-building ‘Group-nodes.Rmd’ --- re-building ‘Identifier-mapping.Rmd’ using rmarkdown --- finished re-building ‘Identifier-mapping.Rmd’ --- re-building ‘Importing-data.Rmd’ using rmarkdown --- finished re-building ‘Importing-data.Rmd’ --- re-building ‘Jupyter-bridge-rcy3.Rmd’ using rmarkdown --- finished re-building ‘Jupyter-bridge-rcy3.Rmd’ --- re-building ‘Network-functions-and-visualization.Rmd’ using rmarkdown --- finished re-building ‘Network-functions-and-visualization.Rmd’ --- re-building ‘Overview-of-RCy3.Rmd’ using rmarkdown --- finished re-building ‘Overview-of-RCy3.Rmd’ --- re-building ‘Phylogenetic-trees.Rmd’ using rmarkdown --- finished re-building ‘Phylogenetic-trees.Rmd’ --- re-building ‘Upgrading-existing-scripts.Rmd’ using rmarkdown --- finished re-building ‘Upgrading-existing-scripts.Rmd’ SUMMARY: processing the following file failed: ‘Cancer-networks-and-data.Rmd’ Error: Vignette re-building failed. Execution halted