############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN ### ############################################################################## ############################################################################## * checking for file ‘COTAN/DESCRIPTION’ ... OK * preparing ‘COTAN’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown Quitting from Guided_tutorial_v2.Rmd:52-69 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `file()`: ! cannot open the connection --- Backtrace: ▆ 1. └─utils::read.csv(dataSetFile, sep = "\t", row.names = 1L) 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘Guided_tutorial_v2.Rmd’ SUMMARY: processing the following file failed: ‘Guided_tutorial_v2.Rmd’ Error: Vignette re-building failed. Execution halted