############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BEARscc ### ############################################################################## ############################################################################## * checking for file ‘BEARscc/DESCRIPTION’ ... OK * preparing ‘BEARscc’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘BEARscc.Rmd’ using rmarkdown Quitting from BEARscc.Rmd:406-410 [compute_cluster_scores] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `melt.default()`: ! The melt generic in data.table has been passed a list and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(metric_list). In the next version, this warning will become an error. --- Backtrace: x 1. \-BEARscc::report_cluster_metrics(...) 2. +-base::append(...) 3. \-base::lapply(...) 4. \-BEARscc (local) FUN(X[[i]], ...) 5. +-data.table::melt(metric_list, id.vars = c("size")) 6. \-data.table:::melt.default(metric_list, id.vars = c("size")) 7. \-data.table:::stopf(...) 8. \-data.table:::raise_condition(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BEARscc.Rmd' failed with diagnostics: The melt generic in data.table has been passed a list and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(metric_list). In the next version, this warning will become an error. --- failed re-building ‘BEARscc.Rmd’ SUMMARY: processing the following file failed: ‘BEARscc.Rmd’ Error: Vignette re-building failed. Execution halted