##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AlphaMissenseR
###
##############################################################################
##############################################################################


* checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK
* preparing ‘AlphaMissenseR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘alphafold.Rmd’ using rmarkdown
--- finished re-building ‘alphafold.Rmd’

--- re-building ‘benchmarking.Rmd’ using rmarkdown
--- finished re-building ‘benchmarking.Rmd’

--- re-building ‘clinvar.Rmd’ using rmarkdown
--- finished re-building ‘clinvar.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘issues.Rmd’ using rmarkdown

Quitting from issues.Rmd:73-75 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `bfcrpath()`:
! all(rids %in% bfcrid(x)) is not TRUE
---
Backtrace:
    ▆
 1. └─AlphaMissenseR::am_data("gene_hg38")
 2.   └─AlphaMissenseR:::db_table(...)
 3.     └─AlphaMissenseR:::db_table_new(...)
 4.       ├─BiocFileCache::bfcrpath(bfc, rnames = rname, fpath = fpath)
 5.       └─BiocFileCache::bfcrpath(bfc, rnames = rname, fpath = fpath)
 6.         ├─BiocFileCache::bfcrpath(x, rids = rids0)
 7.         └─BiocFileCache::bfcrpath(x, rids = rids0)
 8.           └─base::stopifnot(all(rids %in% bfcrid(x)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'issues.Rmd' failed with diagnostics:
all(rids %in% bfcrid(x)) is not TRUE
--- failed re-building ‘issues.Rmd’

SUMMARY: processing the following file failed:
  ‘issues.Rmd’

Error: Vignette re-building failed.
Execution halted