############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ATACCoGAPS ### ############################################################################## ############################################################################## * checking for file ‘ATACCoGAPS/DESCRIPTION’ ... OK * preparing ‘ATACCoGAPS’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ATACCoGAPS.Rmd’ using rmarkdown 2025-03-31 18:51:56.886 R[24878:338092832] XType: Using static font registry. Quitting from ATACCoGAPS.Rmd:89-94 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `matrix()`: ! non-numeric matrix extent --- Backtrace: ▆ 1. └─ATACCoGAPS::patternMarkerCellClassifier(schepCogapsResult) 2. └─base::matrix(NA, nrow(patRanks), ncol(patRanks)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ATACCoGAPS.Rmd' failed with diagnostics: non-numeric matrix extent --- failed re-building ‘ATACCoGAPS.Rmd’ SUMMARY: processing the following file failed: ‘ATACCoGAPS.Rmd’ Error: Vignette re-building failed. Execution halted