##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r HiCool -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data HiCool
###
##############################################################################
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* checking for file 'HiCool/DESCRIPTION' ... OK
* preparing 'HiCool':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HiCool.Rmd' using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\biocbuild\AppData\Local\R\cache\R\basilisk\1.11.3\HiCool\0.99.4\env

  added / updated specs:
    - python=3.7.12


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2022.12.7-h5b45459_0
  libsqlite          conda-forge/win-64::libsqlite-3.40.0-hcfcfb64_0
  openssl            conda-forge/win-64::openssl-3.1.0-hcfcfb64_0
  pip                conda-forge/noarch::pip-23.0.1-pyhd8ed1ab_0
  python             conda-forge/win-64::python-3.7.12-h900ac77_100_cpython
  setuptools         conda-forge/noarch::setuptools-67.6.1-pyhd8ed1ab_0
  sqlite             conda-forge/win-64::sqlite-3.40.0-hcfcfb64_0
  ucrt               conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
  vc                 conda-forge/win-64::vc-14.3-hb6edc58_10
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.34.31931-h4c5c07a_10
  wheel              conda-forge/noarch::wheel-0.40.0-pyhd8ed1ab_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\biocbuild\AppData\Local\R\cache\R\basilisk\1.11.3\HiCool\0.99.4\env

  added / updated specs:
    - python=3.7.12


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2022.12.~ --> pkgs/main::ca-certificates-2023.01.10-haa95532_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 23.3.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - samtools=1.16.1
  - bowtie2=2.5.0

Current channels:

  - https://conda.anaconda.org/conda-forge/win-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://conda.anaconda.org/bioconda/win-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://repo.anaconda.com/pkgs/main/win-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/win-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/msys2/win-64
  - https://repo.anaconda.com/pkgs/msys2/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


Quitting from lines 71-80 (HiCool.Rmd) 
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building 'HiCool.Rmd'

SUMMARY: processing the following file failed:
  'HiCool.Rmd'

Error: Vignette re-building failed.
Execution halted