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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EWCE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EWCE_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/EWCE.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
controlled_geneset_enrichment              21.288  2.663  24.397
merged_ewce                                16.341  1.078  17.819
filter_genes_without_1to1_homolog          16.285  0.462  17.276
filter_nonorthologs                        15.178  0.468  15.849
generate_bootstrap_plots_for_transcriptome 13.075  0.573  13.924
generate_bootstrap_plots                   11.755  0.591  12.594
ewce_expression_data                       11.259  0.653  12.175
bootstrap_enrichment_test                  10.547  0.510  11.329
check_ewce_genelist_inputs                  9.326  0.422   9.989
filter_ctd_genes                            8.756  0.290   9.196
add_res_to_merging_list                     7.895  0.905   9.500
sct_normalize                               8.258  0.391   8.766
merge_ctd                                   7.641  0.561   8.498
standardise_ctd                             7.272  0.212   7.661
bin_specificity_into_quantiles              5.520  0.177   5.814
merge_sce                                   5.421  0.223   5.769
fix_bad_mgi_symbols                         4.743  0.445   5.472
plot_ctd                                    4.949  0.182   5.295
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK