Waldir Leoncio
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/cellmigRation |
| git_branch: master |
| git_last_commit: 71dc596 |
| git_last_commit_date: 2021-10-26 13:08:41 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:08 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the cellmigRation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellmigRation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 268/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cellmigRation 1.3.0 (landing page) Waldir Leoncio
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cellmigRation |
| Version: 1.3.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cellmigRation.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cellmigRation_1.3.0.tar.gz |
| StartedAt: 2022-03-17 18:40:18 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:42:11 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 113.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cellmigRation.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cellmigRation.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cellmigRation_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/cellmigRation.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cellmigRation/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cellmigRation' version '1.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cellmigRation' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cellmigRation.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cellmigRation
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'cellmigRation' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cellmigRation'
finding HTML links ... done
AddDimension html
CellMig-class html
CellMigPCA html
CellMigPCAclust html
CellMigPCAclustALL html
CellTracker html
CellTrackerMainLoop html
CentroidArray html
CentroidValidation html
ComputeTracksStats html
DetectRadii html
DiAutoCor html
DiRatio html
DiRatioPlot html
EstimateDiameterRange html
FMI html
FianlizeOptiParams html
FilterTrackedCells html
FinRes html
ForwardMigration html
GenAllCombos html
LinearConv2 html
LoadTiff html
MSD html
MakeHypercube html
MigrationStats html
NextOdd html
NonParallel4OptimizeParams html
NonParallelTrackLoop html
OptimizeParams html
OptimizeParamsMainLoop html
Parallel4OptimizeParams html
ParallelTrackLoop html
PerAndSpeed html
PlotTracksSeparately html
PostProcessTracking html
Prep4OptimizeParams html
ThreeConditions html
TrackCellsDataset html
TrajectoryDataset html
ValidateTrackingArgs html
VeAutoCor html
VisualizeCntr html
VisualizeImg html
VisualizeStackCentroids html
WSADataset html
aggregateFR html
aggregateTrackedCells html
bpass html
cellmigRation-package html
circshift html
cntrd html
fixDA html
fixExpName html
fixFM1 html
fixFM2 html
fixFM3 html
fixFM4 html
fixFM5 html
fixFM6 html
fixID1 html
fixID2 html
fixID3 html
fixID4 html
fixID5 html
fixID6 html
fixMSD html
fixPER1 html
fixPER2 html
fixPER3 html
getAvailableAggrMetrics html
getCellImages html
getCellMigSlot html
getCellTrackMeta html
getCellTrackStats html
getCellTracks html
getCellsMeta html
getCellsStats html
getDACtable html
getDiRatio html
getFMItable html
getForMigtable html
getImageCentroids html
getImageStacks html
getMSDtable html
getOptimizedParameters html
getOptimizedParams html
getPerAndSpeed html
getPopulationStats html
getProcessedImages html
getProcessingStatus html
getResults html
getTracks html
getVACtable html
initializeTrackParams html
innerBondRaster html
internalPermutation html
matfix html
nontrivialBondTracking html
pkfnd html
plot3DAllTracks html
plot3DTracks html
plotAllTracks html
plotSampleTracks html
preProcCellMig html
rmPreProcessing html
runTrackingPermutation html
setAnalyticParams html
setCellMigSlot html
setCellTracks html
setCellsMeta html
setExpName html
setOptimizedParams html
setProcessedImages html
setProcessingStatus html
setTrackedCellsMeta html
setTrackedCentroids html
setTrackedPositions html
setTrackingStats html
sinkAway html
subNetworkTracking html
track html
trackHypercubeBuild html
trackSlideProcessing html
trackSlideWrapUp html
trackedCells-class html
trivialBondRaster html
trivialBondTracking html
visualizeCellTracks html
visualizeTrcks html
warnMessage html
wsaPreProcessing html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cellmigRation)
Making 'packages.html' ... done
cellmigRation.Rcheck/tests/runTests.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("cellmigRation")
RUNIT TEST PROTOCOL -- Thu Mar 17 18:41:59 2022
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
cellmigRation RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
2.59 0.42 3.00
cellmigRation.Rcheck/cellmigRation-Ex.timings
| name | user | system | elapsed | |
| AddDimension | 0 | 0 | 0 | |
| CellMig-class | 0.01 | 0.02 | 0.03 | |
| CellMigPCA | 1.01 | 0.03 | 1.05 | |
| CellMigPCAclust | 0.02 | 0.00 | 0.02 | |
| CellMigPCAclustALL | 0.44 | 0.00 | 0.43 | |
| CellTracker | 0.01 | 0.00 | 0.02 | |
| CellTrackerMainLoop | 0.02 | 0.00 | 0.01 | |
| CentroidArray | 0.01 | 0.00 | 0.02 | |
| CentroidValidation | 0.33 | 0.02 | 0.34 | |
| ComputeTracksStats | 0.00 | 0.03 | 0.04 | |
| DetectRadii | 0 | 0 | 0 | |
| DiAutoCor | 1.22 | 0.01 | 1.23 | |
| DiRatio | 0.02 | 0.00 | 0.02 | |
| DiRatioPlot | 0.01 | 0.02 | 0.05 | |
| EstimateDiameterRange | 0.02 | 0.00 | 0.01 | |
| FMI | 0.36 | 0.00 | 0.36 | |
| FianlizeOptiParams | 0 | 0 | 0 | |
| FilterTrackedCells | 0.01 | 0.00 | 0.02 | |
| FinRes | 0.68 | 0.00 | 0.67 | |
| ForwardMigration | 0.79 | 0.00 | 0.80 | |
| GenAllCombos | 0 | 0 | 0 | |
| LinearConv2 | 0.00 | 0.02 | 0.02 | |
| LoadTiff | 0 | 0 | 0 | |
| MSD | 1.10 | 0.00 | 1.09 | |
| MakeHypercube | 0 | 0 | 0 | |
| MigrationStats | 0 | 0 | 0 | |
| NextOdd | 0 | 0 | 0 | |
| NonParallel4OptimizeParams | 0 | 0 | 0 | |
| NonParallelTrackLoop | 0 | 0 | 0 | |
| OptimizeParams | 0.00 | 0.01 | 0.02 | |
| OptimizeParamsMainLoop | 0.01 | 0.00 | 0.01 | |
| Parallel4OptimizeParams | 0 | 0 | 0 | |
| ParallelTrackLoop | 0 | 0 | 0 | |
| PerAndSpeed | 0.28 | 0.02 | 0.30 | |
| PlotTracksSeparately | 0.02 | 0.00 | 0.02 | |
| PostProcessTracking | 0 | 0 | 0 | |
| Prep4OptimizeParams | 0.08 | 0.00 | 0.07 | |
| ThreeConditions | 0.01 | 0.00 | 0.02 | |
| TrackCellsDataset | 0.00 | 0.01 | 0.02 | |
| TrajectoryDataset | 0.00 | 0.03 | 0.03 | |
| ValidateTrackingArgs | 0 | 0 | 0 | |
| VeAutoCor | 0.77 | 0.00 | 0.76 | |
| VisualizeCntr | 0 | 0 | 0 | |
| VisualizeImg | 0 | 0 | 0 | |
| VisualizeStackCentroids | 0.06 | 0.00 | 0.06 | |
| WSADataset | 0.00 | 0.02 | 0.02 | |
| aggregateFR | 0.47 | 0.02 | 0.48 | |
| aggregateTrackedCells | 0.01 | 0.00 | 0.02 | |
| bpass | 0.05 | 0.00 | 0.05 | |
| circshift | 0 | 0 | 0 | |
| cntrd | 0.69 | 0.03 | 0.72 | |
| fixDA | 0 | 0 | 0 | |
| fixExpName | 0 | 0 | 0 | |
| fixFM1 | 0 | 0 | 0 | |
| fixFM2 | 0 | 0 | 0 | |
| fixFM3 | 0 | 0 | 0 | |
| fixFM4 | 0 | 0 | 0 | |
| fixFM5 | 0 | 0 | 0 | |
| fixFM6 | 0 | 0 | 0 | |
| fixID1 | 0 | 0 | 0 | |
| fixMSD | 0 | 0 | 0 | |
| fixPER1 | 0 | 0 | 0 | |
| fixPER2 | 0 | 0 | 0 | |
| fixPER3 | 0.02 | 0.00 | 0.01 | |
| getAvailableAggrMetrics | 1.17 | 0.00 | 1.18 | |
| getCellImages | 0.17 | 0.48 | 0.65 | |
| getCellMigSlot | 0.14 | 0.33 | 0.47 | |
| getCellTrackMeta | 0.02 | 0.00 | 0.02 | |
| getCellTrackStats | 0.02 | 0.00 | 0.01 | |
| getCellTracks | 0.00 | 0.02 | 0.02 | |
| getCellsMeta | 0.01 | 0.01 | 0.03 | |
| getCellsStats | 0.02 | 0.00 | 0.01 | |
| getDACtable | 1.28 | 0.00 | 1.29 | |
| getDiRatio | 0.03 | 0.00 | 0.03 | |
| getFMItable | 0.37 | 0.00 | 0.37 | |
| getForMigtable | 0.38 | 0.00 | 0.38 | |
| getImageCentroids | 0.00 | 0.02 | 0.01 | |
| getImageStacks | 0.05 | 0.03 | 0.08 | |
| getMSDtable | 3.12 | 0.00 | 3.81 | |
| getOptimizedParameters | 0.02 | 0.00 | 0.02 | |
| getOptimizedParams | 0.01 | 0.00 | 0.01 | |
| getPerAndSpeed | 0.22 | 0.01 | 0.24 | |
| getPopulationStats | 0.02 | 0.00 | 0.01 | |
| getProcessedImages | 0.23 | 0.47 | 0.71 | |
| getProcessingStatus | 0.00 | 0.02 | 0.01 | |
| getResults | 0.43 | 0.00 | 0.44 | |
| getTracks | 0.00 | 0.01 | 0.01 | |
| getVACtable | 0.72 | 0.02 | 0.74 | |
| initializeTrackParams | 0 | 0 | 0 | |
| innerBondRaster | 0 | 0 | 0 | |
| internalPermutation | 0 | 0 | 0 | |
| matfix | 0 | 0 | 0 | |
| nontrivialBondTracking | 0 | 0 | 0 | |
| pkfnd | 0.5 | 0.0 | 0.5 | |
| plot3DAllTracks | 0.10 | 0.01 | 0.12 | |
| plot3DTracks | 0 | 0 | 0 | |
| plotAllTracks | 0.01 | 0.02 | 0.03 | |
| plotSampleTracks | 0.02 | 0.00 | 0.02 | |
| preProcCellMig | 0 | 0 | 0 | |
| rmPreProcessing | 0.05 | 0.02 | 0.06 | |
| runTrackingPermutation | 0.01 | 0.00 | 0.02 | |
| setAnalyticParams | 0.02 | 0.00 | 0.01 | |
| setCellMigSlot | 0.01 | 0.00 | 0.02 | |
| setCellTracks | 0.00 | 0.01 | 0.01 | |
| setCellsMeta | 0.00 | 0.02 | 0.02 | |
| setExpName | 0.00 | 0.01 | 0.02 | |
| setOptimizedParams | 0.01 | 0.00 | 0.02 | |
| setProcessedImages | 0.02 | 0.00 | 0.01 | |
| setProcessingStatus | 0.03 | 0.00 | 0.03 | |
| setTrackedCellsMeta | 0.02 | 0.00 | 0.02 | |
| setTrackedCentroids | 0.01 | 0.02 | 0.03 | |
| setTrackedPositions | 0.02 | 0.00 | 0.02 | |
| setTrackingStats | 0.01 | 0.00 | 0.01 | |
| sinkAway | 0 | 0 | 0 | |
| subNetworkTracking | 0 | 0 | 0 | |
| track | 0.02 | 0.00 | 0.02 | |
| trackHypercubeBuild | 0 | 0 | 0 | |
| trackSlideProcessing | 0 | 0 | 0 | |
| trackSlideWrapUp | 0 | 0 | 0 | |
| trivialBondRaster | 0 | 0 | 0 | |
| trivialBondTracking | 0 | 0 | 0 | |
| visualizeCellTracks | 0.05 | 0.01 | 0.12 | |
| visualizeTrcks | 0.03 | 0.00 | 0.03 | |
| warnMessage | 0 | 0 | 0 | |
| wsaPreProcessing | 0.06 | 0.00 | 0.07 | |