Shuyu Zheng
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/synergyfinder |
| Branch: RELEASE_3_12 |
| Last Commit: 5d572fb |
| Last Changed Date: 2021-04-21 10:12:08 -0400 (Wed, 21 Apr 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:53 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the synergyfinder package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1828/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| synergyfinder 2.4.16 (landing page) Shuyu Zheng
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: synergyfinder |
| Version: 2.4.16 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/synergyfinder_2.4.16.tar.gz && rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.4.16.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL synergyfinder_2.4.16.zip && rm synergyfinder_2.4.16.tar.gz synergyfinder_2.4.16.zip |
| StartedAt: 2021-05-05 18:50:19 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:52:24 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 125.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/synergyfinder_2.4.16.tar.gz && rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.4.16.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL synergyfinder_2.4.16.zip && rm synergyfinder_2.4.16.tar.gz synergyfinder_2.4.16.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 106k 100 106k 0 0 2324k 0 --:--:-- --:--:-- --:--:-- 2368k
install for i386
* installing *source* package 'synergyfinder' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'synergyfinder'
finding HTML links ... done
Bliss html
CalculateCSS html
CalculateIC50 html
CalculateSens html
CalculateSensitivity html
CalculateSynergy html
CorrectBaseLine html
DimensionReduction html
ExtractSingleDrug html
FindModelPar html
FindModelType html
FitDoseResponse html
GenerateSurface html
HSA html
HighlightBarPlot html
ImputeIC50 html
Loewe html
NCATS_screening_data html
ONEIL_screening_data html
Plot2DrugContour html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/Plot2DrugContour.Rd:73: file link 'wireframe' in package 'lattice' does not exist and so has been treated as a topic
Plot2DrugHeatmap html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/Plot2DrugHeatmap.Rd:79: file link 'wireframe' in package 'lattice' does not exist and so has been treated as a topic
Plot2DrugSurface html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/Plot2DrugSurface.Rd:87: file link 'wireframe' in package 'lattice' does not exist and so has been treated as a topic
PlotBarometer html
PlotDoseResponse html
PlotDoseResponseCurve html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/PlotDoseResponseCurve.Rd:73: file link 'plot.new' in package 'graphics' does not exist and so has been treated as a topic
PlotMultiDrugBar html
PlotMultiDrugSurface html
PlotSensitiveSynergy html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/PlotSensitiveSynergy.Rd:43: file link 'wireframe' in package 'lattice' does not exist and so has been treated as a topic
PlotSynergy html
PredictModelSpecify html
PredictResponse html
ReshapeData html
ZIP html
dot-AdjustColumnName html
dot-Bootstrapping html
dot-Distance html
dot-ExtendedScores html
dot-Extract2DrugPlotData html
dot-ExtractMultiDrugPlotData html
dot-Pt2mm html
dot-RoundValues html
dot-ScoreCurve html
dot-ScoreCurve_L4 html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-ScoreCurve_L4.Rd:10: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-ScoreCurve_L4.Rd:13: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-ScoreCurve_L4.Rd:16: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-ScoreCurve_L4.Rd:19: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
dot-SolveExpDoesL4 html
dot-SolveExpDoesLL4 html
dot-SolveExpDose html
dot-SolveLoewe html
dot-own_log html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-own_log.Rd:11: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-own_log.Rd:14: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-own_log.Rd:17: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
dot-own_log2 html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMJlvGL/R.INSTALL284fd866a9/synergyfinder/man/dot-own_log2.Rd:11: file link 'L.4' in package 'drc' does not exist and so has been treated as a topic
mathews_screening_data html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'synergyfinder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synergyfinder' as synergyfinder_2.4.16.zip
* DONE (synergyfinder)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'synergyfinder' successfully unpacked and MD5 sums checked