| addFeatureStats | Add feature statistics |
| convert_to_SCE | Convert Sparse Matrix to SingleCellExperiment object |
| getCounts | Get counts from Single Cell Experiment object |
| global | simPIC: Simulate single-cell ATAC-seq data |
| newsimPICcount | newsimPICcount |
| plot_theme | Custom theme for ggplot2 |
| rbindMatched | Bind rows (matched) |
| selectFit | Select fit |
| setsimPICparameters | Set simPIC parameters |
| simPICcompare | Compare SingleCellExperiment objects |
| simPICcount | The simPICcount class |
| simPICcount-class | The simPICcount class |
| simPICestimate | Estimate simPIC simulation parameters |
| simPICestimate.dgCMatrix | Estimate simPIC simulation parameters |
| simPICestimate.SingleCellExperiment | Estimate simPIC simulation parameters |
| simPICestimateLibSize | Estimate simPIC library size parameters. |
| simPICestimatePeakMean | Estimate simPIC peak means |
| simPICestimateSparsity | Estimate simPIC peak sparsity. |
| simPICget | Get a single simPICcount parameter |
| simPICgetparameters | Get parameters |
| simPICsimulate | simPIC simulation |
| simPICsimulateLibSize | Simulate simPIC library sizes |
| simPICsimulatePeakMean | Simulate simPIC peak means. |
| simPICsimulateTrueCounts | Simulate true counts. |