Package: sosta
Title: A package for the analysis of anatomical tissue structures in
        spatial omics data
Version: 1.3.0
Authors@R: c(
    person("Samuel", "Gunz", , "samuel.gunz@uzh.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8909-0932")),
    person("Mark D.", "Robinson", role=c("aut", "fnd"), 
	    email="mark.robinson@mls.uzh.ch"))
Description: sosta (Spatial Omics STructure Analysis) is a package for
        analyzing spatial omics data to explore tissue organization at
        the anatomical structure level. It reconstructs anatomically
        relevant structures based on molecular features or cell types.
        It further calculates a range of metrics at the structure level
        to quantitatively describe tissue architecture. The package is
        designed to integrate with other packages for the analysis of
        spatial omics data.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.4.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/sgunz/sosta, https://sgunz.github.io/sosta/
BugReports: https://github.com/sgunz/sosta/issues
biocViews: Software, Spatial, Transcriptomics, Visualization
Imports: terra, sf, smoothr, spatstat.explore, spatstat.geom,
        SpatialExperiment, SingleCellExperiment, dplyr, ggplot2,
        patchwork, SummarizedExperiment, stats, rlang, parallel,
        EBImage, spatstat.random, S4Vectors
Suggests: knitr, rmarkdown, BiocStyle, ExperimentHub, lme4, lmerTest,
        ggfortify, tidyr, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
Config/pak/sysreqs: libabsl-dev cmake libfftw3-dev libgdal-dev gdal-bin
        libgeos-dev make libmagick++-dev gsfonts libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:33:49 UTC
RemoteUrl: https://github.com/bioc/sosta
RemoteRef: HEAD
RemoteSha: 02b3ce28581e7b6020a017b89f4381193f9dc32a
NeedsCompilation: no
Packaged: 2026-02-03 10:04:24 UTC; root
Author: Samuel Gunz [aut, cre] (ORCID: <https://orcid.org/0000-0002-8909-0932>),
  Mark D. Robinson [aut, fnd]
Maintainer: Samuel Gunz <samuel.gunz@uzh.ch>
Built: R 4.6.0; ; 2026-02-03 10:08:21 UTC; windows
