Changes in version 1.23.1 (2025-07-17)
+ fixed compatibility issues with xgboost version>=3

Changes in version 1.19.9 (2025-01-07)
+ fixed the default dbr.per1k value in the top-level function
+ slight memory improvements (gc and not coercing DelayedArray before sample split)

Changes in version 1.19.6 (2024-09-19)
+ added a dbr.per1k parameter to set doublet rates per thousands of cells, updated the default from 1 to 0.8\%
+ fixed some issues stemming from the cxds score in some corner cases (absence of inverse correlation between genes)
+ updated documentation

Changes in version 1.13.14 (2023-06-19)
+ reduced the default minimum number of artificial doublets to improve call robustness in very small datasets.

Changes in version 1.13.10 (2023-03-23)
+ fixed serializing error in multithreading large single samples
+ computed thresholds now reported in metadata

Changes in version 1.13.7 (2023-01-09)
+ added possibility to provide the genes/features to use, updated docs

Changes in version 1.13.4 (2022-11-21)
+ fixed bug in samples reporting in split mode (doesn't affect doublets scores)

Changes in version 1.13.3 (2022-11-20)
+ updated default parameters according to https://arxiv.org/abs/2211.00772

Changes in version 1.13.2 (2022-11-11)
+ added two-pass mode for feature aggregation

Changes in version 1.9.11 (2022-04-16)
+ fixed larger kNN size

Changes in version 1.9.9 (2022-04-9)
+ improved amulet reimplementation
+ added clamulet and scATAC vignette

Changes in version 1.9.1 (2021-11-02)
+ added reimplementation of the amulet method for scATAC-seq

Changes in version 1.7.3 (2021-07-26)
+ scDblFinder now includes both cluster-based and random modes for artificial doublet generation
+ thresholding has been streamlined
+ default parameters have been optimized using benchmark datasets
+ added the `directDblClassification` method

Changes in version 1.5.11 (2021-01-19)
+ scDblFinder now provides doublet enrichment tests
+ doublet generation and default parameters have been further optimized

Changes in version 1.3.25 (2020-10-26)
+ scDblFinder has important improvements on speed, robustness and accuracy
+ in additional to doublet calls, scDblFinder reports the putative origin (combination of clusters) of doublets

Changes in version 1.3.19 (2020-08-06)
+ scDblFinder now hosts the doublet detection methods formerly part of `scran`
