AnnotateTable           Annotate a Peaktable
FEMsettings             Example settings for 'metaMS'
GCresults               Results of metaMS for a small GC-MS data set
LCDBtest                Sample DB for LC-MS annotation
LCresults               Result metaMS for a small LC-MS data set
addRI                   Add retention index information to an msp
                        object
alignmentLC             LC alignment
annotations2tab         Conversion of a list of annotation results into
                        a table
constructExpPseudoSpectra
                        Create a list of all pseudospectra found in a
                        GC-MS experiment of several samples.
createSTDdbGC           Create an in-house database for GC-MS
                        annotation
createSTDdbLC           Create an in-house database for LC-MS
                        annotation
errf                    Mass error surface for Waters Synapt Q-TOF
                        spectrometers
exptable                Sample table for the generation of a database
                        of standards (LCMS)
getAnnotationLC         Get LC annotation
getAnnotationMat        Obtain relative quantitative annotation results
                        for GC-MS
getFeatureInfo          Construct an object containing all
                        meta-information of the annotated pseudospectra
                        (GC-MS).
getPeakTable            Extract a peak table from an xcms or CAMERA
                        object
match2ExtDB             Match GC-MS spectra to an external reference DB
matchExpSpec            Match a GC-MS pseudospectrum to a database with
                        a weighted crossproduct criterion.
matchSamples2DB         Match pseudospectra from several samples to an
                        in-house DB (GC-MS)
matchSamples2Samples    Compare pseudospectra across samples (GC-MS)
metaMS-package          Analysis pipeline for MS-based metabolomics
                        data
metaMSsettings-class    Class '"metaMSsettings"'
metaSetting             Get or set values in metaMSsettings objects
msp                     Functions to handle msp-type objects (GC-MS)
peakDetection           Wrapper for XCMS peak detection, to be used for
                        both GC-MS and LC-MS data.
plotPseudoSpectrum      Plot a pseudospectrum.
printString             Functions for metaMS-formatted text output
processStandards        Process input files containing raw data for
                        pure standards.
readStdInfo             Read information of GC injections of standards
                        from a csv file
removeDoubleMasses      Remove double m/z entries in a pseudospectrum
runCAMERA               The CAMERA element in the metaMS pipeline
runGC                   Wrapper for processing of GC-MS data files
runLC                   Wrapper for processing of LC-MS data files
threeStdsDB             Information on three chemical standards
                        measured in GC-MS (liquid injection)
treat.DB                Scaling of pseudospectra in an msp object
