235f3f5f235d3d3d1a056d2d02054afe *CITATION
d191c773fa2ebc9c089f93540db3c5a3 *DESCRIPTION
54ca7a321643a916c919991786b5110f *INDEX
a67b2bae97e1d6d416f773cb3f897596 *LICENSE
3f30593594e0721e9de45b413cc3b376 *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
12579c7efa312f4aeb84473733cb9450 *Meta/hsearch.rds
c86259fd3404b584e6f6076e82cc9030 *Meta/links.rds
e3d0c6bcc5ca789e54ff1bcbf347fe71 *Meta/nsInfo.rds
cf99177a31300ad51a3ff00b109a70e6 *Meta/package.rds
8df40bb9b07780569f0f0e4f46e43a75 *Meta/vignette.rds
92a9c42e8c837bdcec7e5648d961afce *NAMESPACE
ab66dcace749116172cbd2ca24f0e47e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/lineagespot
cd3dd534332046101e3120b02d015156 *R/lineagespot.rdb
ed6274b82b1adad8723152ee1ceb9858 *R/lineagespot.rdx
074a2500e3d4dc40a9b4a703035de8f8 *doc/index.html
a93bdc3a9b7f87d8952bea985041176e *doc/lineagespot.R
e8c040fb4a7658ecd5dab9d21dcf8ecc *doc/lineagespot.Rmd
a95b73be7b335eb179bad23b40f41684 *doc/lineagespot.html
f5e0a3774b7342f30933a6a6096b87d8 *extdata/NC_045512.2_annot.gff3
75d5f9e5aa25e8295175be3f01e5c801 *extdata/ref/AY.1.txt
a63320752bc2b7751296b4449f6e97c7 *extdata/ref/AY.2.txt
d4411d1c25b50414e66bc84fa561ad82 *extdata/ref/AY.3.1.txt
9cadcd3d11009852ef56b367f85192c2 *extdata/ref/AY.3.txt
6c30d353b0b6943653fcf8ddd4191f27 *extdata/ref/B.1.1.7+S_E484K.txt
9ea0bb2f409d7477cd4fce4f6961e883 *extdata/ref/B.1.1.7.txt
37988678fe4feeb5615208b395df7761 *extdata/ref/B.1.351.2.txt
bf8aba1c30257ea58a10556a1e990a98 *extdata/ref/B.1.351.3.txt
34a840993d5217bac537fe1d586887ad *extdata/ref/B.1.351.txt
8856c72b91d113b8ba7ae808637c44e3 *extdata/ref/B.1.617.2.txt
baba26946cb2b1592e81f3d031af4ab6 *extdata/ref/P.1.1.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.2.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.txt
55367e21ab319d455b1f86c15f770c6f *extdata/srep-article-code/README.md
7d232ebab2293db3c3157327af2c4bb1 *extdata/vcf-files/SampleA_freebayes_ann.vcf
e99b4f3fc50668b0f4f8ab04eb00d0e3 *extdata/vcf-files/SampleB_freebayes_ann.vcf
71c9b4573e3e3f830fd4f2ff2f0e2b46 *extdata/vcf-files/SampleC_freebayes_ann.vcf
71b6b3785f86d1adfe5dcbc69efc8bf3 *help/AnIndex
c1f62433414cba4d50152c73f7e06a3f *help/aliases.rds
e67f2828494c3f313a2a01f6904b96e0 *help/lineagespot.rdb
4d038f54622e1b3544e506a4d0efe8a2 *help/lineagespot.rdx
a6705c7a603593062b0a75b6bd1d2cb4 *help/paths.rds
dde4a3a046251008807453486168a9a1 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
9c4d7c29f3d4c520b036f6468d6f53d5 *scripts/README.md
c312f2fdbc6e364b727fbed8b26623fb *scripts/raw-data-analysis.md
