aggregateNeighbors      Function to aggregate all neighbors of each
                        cell.
binAcrossPixels         Aggregate consecutive pixels per single-metal
                        spot
buildSpatialGraph       Builds an interaction graph based on the cells'
                        locations
countInteractions       Summarizes cell-cell interactions within
                        grouping levels (e.g. images)
detectCommunity         Detect the spatial community of each cell
detectSpatialContext    Detect the spatial context of each cell based
                        on its neighborhood
distToCells             Function to calculate distance to cells of
                        interest
filterPixels            Filter pixels based on their assigned masses
filterSpatialContext    Filter spatial contexts
findBorderCells         Find cells at the image border
patchDetection          Function to detect patches containing defined
                        cell types
patchSize               Function to compute the area of c3ll patches
plotInteractions        Plot interaction graph
plotSpatial             Visualizes the spatial locations and
                        interactions of cells
plotSpatialContext      Plot spatial context graph
plotSpotHeatmap         Summarizes and visualizes the pixel intensities
                        per spot and channel
readImagefromTXT        Reads one or multiple .txt files into a
                        CytoImageList object
readSCEfromTIFF         Generates a SingleCellExperiment from .tiff
                        files
readSCEfromTXT          Generates a SingleCellExperiment from .txt
                        files
read_cpout              Reads in single-cell data generated by the
                        ImcSegmentationPipeline
read_steinbock          Reads in single-cell data generated by the
                        steinbock pipeline
show_cpout_features     Display all features measured by CellProfiler.
testInteractions        Tests if cell types interact more or less
                        frequently than random
