# Generated by roxygen2: do not edit by hand

export(aggregateNeighbors)
export(binAcrossPixels)
export(buildSpatialGraph)
export(countInteractions)
export(detectCommunity)
export(detectSpatialContext)
export(distToCells)
export(filterPixels)
export(filterSpatialContext)
export(findBorderCells)
export(patchDetection)
export(patchSize)
export(plotInteractions)
export(plotSpatial)
export(plotSpatialContext)
export(plotSpotHeatmap)
export(readImagefromTXT)
export(readSCEfromTIFF)
export(readSCEfromTXT)
export(read_cpout)
export(read_steinbock)
export(show_cpout_features)
export(testInteractions)
import(SingleCellExperiment)
import(ggraph)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocNeighbors,findNeighbors)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(DT,datatable)
importFrom(EBImage,Image)
importFrom(EBImage,readImage)
importFrom(MatrixGenerics,rowMaxs)
importFrom(MatrixGenerics,rowMeans)
importFrom(MatrixGenerics,rowMedians)
importFrom(MatrixGenerics,rowMins)
importFrom(RTriangle,pslg)
importFrom(RTriangle,triangulate)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SelfHits)
importFrom(S4Vectors,isRedundantHit)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,colPair)
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SpatialExperiment,spatialCoordsNames)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"metadata<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(abind,abind)
importFrom(concaveman,concaveman)
importFrom(cytomapper,"channelNames<-")
importFrom(cytomapper,CytoImageList)
importFrom(cytomapper,channelNames)
importFrom(data.table,":=")
importFrom(data.table,CJ)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,dcast.data.table)
importFrom(data.table,melt)
importFrom(data.table,melt.data.table)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(distances,distance_columns)
importFrom(distances,distances)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,as_tibble)
importFrom(dplyr,contains)
importFrom(dplyr,count)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_all)
importFrom(dplyr,group_by_at)
importFrom(dplyr,join_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,nest_by)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,sym)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,ggraph)
importFrom(grDevices,chull)
importFrom(grid,arrow)
importFrom(grid,unit)
importFrom(igraph,as.directed)
importFrom(igraph,as.undirected)
importFrom(igraph,as_edgelist)
importFrom(igraph,cluster_louvain)
importFrom(igraph,components)
importFrom(igraph,edge_attr)
importFrom(igraph,graph_from_adj_list)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,layout.sugiyama)
importFrom(igraph,membership)
importFrom(igraph,simplify)
importFrom(igraph,sizes)
importFrom(igraph,vertex_attr)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,is)
importFrom(pheatmap,pheatmap)
importFrom(readr,cols)
importFrom(readr,read_delim)
importFrom(rlang,.data)
importFrom(scuttle,aggregateAcrossCells)
importFrom(sf,st_area)
importFrom(sf,st_buffer)
importFrom(sf,st_cast)
importFrom(sf,st_distance)
importFrom(sf,st_intersects)
importFrom(sf,st_multipoint)
importFrom(sf,st_polygon)
importFrom(sf,st_sfc)
importFrom(stats,dist)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(tidygraph,tbl_graph)
importFrom(tidyselect,all_of)
importFrom(utils,getFromNamespace)
importFrom(utils,globalVariables)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,viridis)
importFrom(vroom,vroom)
