Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 2.23.1
Date: 2025-11-16
Authors@R: c(
    person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Federico", "Marini", role="aut", email="marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Create an interactive Shiny-based graphical user interface
        for exploring data stored in SummarizedExperiment objects,
        including row- and column-level metadata. The interface
        supports transmission of selections between plots and tables,
        code tracking, interactive tours, interactive or programmatic
        initialization, preservation of app state, and extensibility to
        new panel types via S4 classes. Special attention is given to
        single-cell data in a SingleCellExperiment object with
        visualization of dimensionality reduction results.
Depends: SummarizedExperiment, SingleCellExperiment
Imports: methods, BiocGenerics, S4Vectors, utils, stats, shiny,
        shinydashboard, shinyAce, shinyjs, DT, rintrojs, ggplot2 (>=
        3.4.0), ggrepel, colourpicker, igraph, vipor, mgcv, graphics,
        grDevices, viridisLite, shinyWidgets, listviewer,
        ComplexHeatmap, circlize, grid
Suggests: testthat, covr, BiocStyle, knitr, rmarkdown, scRNAseq,
        TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer,
        viridis, htmltools, GenomicRanges
URL: https://isee.github.io/iSEE/
BugReports: https://github.com/iSEE/iSEE/issues
biocViews: CellBasedAssays, Clustering, DimensionReduction,
        FeatureExtraction, GeneExpression, GUI, ImmunoOncology,
        ShinyApps, SingleCell, Transcription, Transcriptomics,
        Visualization
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: libglpk-dev make libpng-dev libxml2-dev perl
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-16 20:54:33 UTC
RemoteUrl: https://github.com/bioc/iSEE
RemoteRef: HEAD
RemoteSha: 827fb90424da69c0ff977e7243941f478532fb69
NeedsCompilation: no
Packaged: 2026-01-09 08:38:05 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Built: R 4.6.0; ; 2026-01-09 08:42:08 UTC; windows
