Package: enrichViewNet
Type: Package
Version: 1.9.1
Date: 2023-08-12
Title: From functional enrichment results to biological networks
Description: This package enables the visualization of functional
        enrichment results as network graphs. First the package enables
        the visualization of enrichment results, in a format
        corresponding to the one generated by gprofiler2, as a
        customizable Cytoscape network. In those networks, both gene
        datasets (GO terms/pathways/protein complexes) and genes
        associated to the datasets are represented as nodes. While the
        edges connect each gene to its dataset(s). The package also
        provides the option to create enrichment maps from functional
        enrichment results. Enrichment maps enable the visualization of
        enriched terms into a network with edges connecting overlapping
        genes.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
    role=c("aut", "cre"), comment=c(ORCID = "0000-0001-7846-6749")), 
    person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
    role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")), 
    person("Robert L.", "Faure", email="robert.faure@crchudequebec.ulaval.ca",
    role=c("aut"), comment=c(ORCID="0000-0003-1798-4723")), 
    person("Maria J.", "Fernandes", 
    email="maria.fernandes@crchudequebec.ulaval.ca", role = c("aut"), 
    comment=c(ORCID="0000-0002-3973-025X")),
    person(given="Alexander", family="Krasnitz", email="krasnitz@cshl.edu",
    role=c("aut")),
    person(given="David A.", family="Tuveson",
    email="dtuveson@cshl.edu", 
    role=c("aut"), comment=c(ORCID="0000-0002-8017-2712")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.2.0)
Imports: gprofiler2, strex, RCy3, jsonlite, stringr, enrichplot,
        igraph, reshape2, methods
Suggests: BiocStyle, knitr, rmarkdown, ggplot2, scatterpie, ggtangle,
        ggrepel, testthat, ggnetwork, magick
biocViews: BiologicalQuestion, Software, Network, NetworkEnrichment, GO
VignetteBuilder: knitr
URL: https://github.com/adeschen/enrichViewNet,
        https://adeschen.github.io/enrichViewNet/
BugReports: https://github.com/adeschen/enrichViewNet/issues
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libxml2-dev libssl-dev
        python3 libzmq3-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-12-31 23:03:47 UTC
RemoteUrl: https://github.com/bioc/enrichViewNet
RemoteRef: HEAD
RemoteSha: 9d4d7b1538e167099a5f380f0935f633ad8a7385
NeedsCompilation: no
Packaged: 2026-01-01 04:14:14 UTC; root
Author: Astrid Deschênes [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),
  Robert L. Faure [aut] (ORCID: <https://orcid.org/0000-0003-1798-4723>),
  Maria J. Fernandes [aut] (ORCID:
    <https://orcid.org/0000-0002-3973-025X>),
  Alexander Krasnitz [aut],
  David A. Tuveson [aut] (ORCID: <https://orcid.org/0000-0002-8017-2712>)
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.6.0; ; 2026-01-01 04:16:16 UTC; windows
