Package: conumee
Title: Enhanced copy-number variation analysis using Illumina DNA
        methylation arrays
Version: 1.45.0
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee@hovestadt.bio>
Address: Division of Molecular Genetics, German Cancer Research Center
        (DKFZ), Heidelberg, Germany
Description: This package contains a set of processing and plotting
        methods for performing copy-number variation (CNV) analysis
        using Illumina 450k or EPIC methylation arrays.
Imports: methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges,
        Seqinfo
Depends: R (>= 3.5.0), minfi,
        IlluminaHumanMethylation450kanno.ilmn12.hg19,
        IlluminaHumanMethylation450kmanifest,
        IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
        IlluminaHumanMethylationEPICmanifest
Suggests: BiocStyle, knitr, rmarkdown, minfiData, RCurl
License: GPL (>= 2)
LazyData: false
Collate: classes.R annotation.R load.R process.R output.R data.R
biocViews: CopyNumberVariation, DNAMethylation, MethylationArray,
        Microarray, Normalization, Preprocessing, QualityControl,
        Software
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:25:31 UTC
RemoteUrl: https://github.com/bioc/conumee
RemoteRef: HEAD
RemoteSha: 88ddea18f3099424266f922a94ddf21f91590510
NeedsCompilation: no
Packaged: 2026-01-13 08:50:59 UTC; root
Built: R 4.6.0; ; 2026-01-13 08:57:49 UTC; windows
