Package: bacon
Type: Package
Title: Controlling bias and inflation in association studies using the
        empirical null distribution
Version: 1.39.0
Authors@R: c(person("Maarten", "van Iterson",
        email="mviterson@gmail.com", role="cre"), person("Erik", "van
        Zwet", role="ctb"))
Author: Maarten van Iterson [aut, cre], Erik van Zwet [ctb]
Maintainer: Maarten van Iterson <mviterson@gmail.com>
Description: Bacon can be used to remove inflation and bias often
        observed in epigenome- and transcriptome-wide association
        studies. To this end bacon constructs an empirical null
        distribution using a Gibbs Sampling algorithm by fitting a
        three-component normal mixture on z-scores.
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.3), methods, stats, ggplot2, graphics, BiocParallel,
        ellipse
Suggests: BiocStyle, knitr, rmarkdown, testthat, roxygen2
biocViews: ImmunoOncology, StatisticalMethod, Bayesian, Regression,
        GenomeWideAssociation, Transcriptomics, RNASeq,
        MethylationArray, BatchEffect, MultipleComparison
RoxygenNote: 7.3.1
Collate: 'BaconClass.R' 'BaconMethods.R' 'bacon.R' 'normmixture.R'
VignetteBuilder: knitr
NeedsCompilation: yes
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:30:45 UTC
RemoteUrl: https://github.com/bioc/bacon
RemoteRef: HEAD
RemoteSha: d5305cfa5cb2fbcc11a632aaa3f68679ffa64084
Packaged: 2025-11-02 03:32:21 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2025-11-02 03:34:50 UTC; windows
Archs: x64
