Package: Spaniel
Type: Package
Title: Spatial Transcriptomics Analysis
Version: 1.25.0
Authors@R: 
    c(person("Rachel", "Queen", role = c("aut", "cre"), email = "rachel.queen@newcastle.ac.uk"))
Description: Spaniel includes a series of tools to aid the quality
        control and analysis of Spatial Transcriptomics data. Spaniel
        can import data from either the original Spatial
        Transcriptomics system or 10X Visium technology. The package
        contains functions to create a SingleCellExperiment Seurat
        object and provides a method of loading a histologial image
        into R. The spanielPlot function allows visualisation of
        metrics contained within the S4 object overlaid onto the image
        of the tissue.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: Seurat, SingleCellExperiment, SummarizedExperiment, dplyr,
        methods, ggplot2, scater (>= 1.13), scran, igraph, shiny, jpeg,
        magrittr, utils, S4Vectors, DropletUtils, jsonlite, png
Suggests: knitr, rmarkdown, testthat, devtools
VignetteBuilder: knitr
biocViews: SingleCell, RNASeq, QualityControl, Preprocessing,
        Normalization, Visualization, Transcriptomics, GeneExpression,
        Sequencing, Software, DataImport, DataRepresentation,
        Infrastructure, Coverage, Clustering
Collate: 'utilities.R' 'addClusterCols.R' 'addCoordinates.R'
        'createObjects.R' 'parseImage.R' 'removeSpots.R'
        'spanielPlotInternals.R' 'spanielPlot.R' 'shinySpaniel.R'
        'tenX.R'
RoxygenNote: 7.1.1
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:54:28 UTC
RemoteUrl: https://github.com/bioc/Spaniel
RemoteRef: HEAD
RemoteSha: b3f45b0e252b208dfdd1fef3d6b34a9bcac458b0
NeedsCompilation: no
Packaged: 2026-01-22 19:09:52 UTC; root
Author: Rachel Queen [aut, cre]
Maintainer: Rachel Queen <rachel.queen@newcastle.ac.uk>
Built: R 4.6.0; ; 2026-01-22 19:12:09 UTC; windows
