Package: PrInCE
Title: Predicting Interactomes from Co-Elution
Version: 1.27.0
Authors@R: c(
  person("Michael", "Skinnider", email = "michael.skinnider@msl.ubc.ca",
         role = c("aut", "trl", "cre")),
  person("R. Greg", "Stacey", email = "richard.greg.stacey@msl.ubc.ca",
         role = "ctb"),
  person("Nichollas", "Scott", email = "nichollas.scott@unimelb.edu.au",
         role = "ctb"),
  person("Anders", "Kristensen", role = "ctb"),
  person("Leonard", "Foster", email = "foster@msl.ubc.ca",
         role = c("aut", "led")))
BugReports: https://github.com/fosterlab/PrInCE/issues
Description: PrInCE (Predicting Interactomes from Co-Elution) uses a
        naive Bayes classifier trained on dataset-derived features to
        recover protein-protein interactions from co-elution
        chromatogram profiles. This package contains the R
        implementation of PrInCE.
Depends: R (>= 3.6.0)
Imports: purrr (>= 0.2.4), dplyr (>= 0.7.4), tidyr (>= 0.8.99),
        forecast (>= 8.2), progress (>= 1.1.2), Hmisc (>= 4.0),
        naivebayes (>= 0.9.1), robustbase (>= 0.92-7), ranger (>=
        0.8.0), LiblineaR (>= 2.10-8), speedglm (>= 0.3-2), tester (>=
        0.1.7), magrittr (>= 1.5), Biobase (>= 2.40.0), MSnbase (>=
        2.8.3), stats, utils, methods, Rdpack (>= 0.7)
Suggests: BiocStyle, knitr, rmarkdown
biocViews: Proteomics, SystemsBiology, NetworkInference
VignetteBuilder: knitr
License: GPL-3 + file LICENSE
Encoding: UTF-8
RdMacros: Rdpack
RoxygenNote: 7.1.1
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
        libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:50:32 UTC
RemoteUrl: https://github.com/bioc/PrInCE
RemoteRef: HEAD
RemoteSha: bfd792d2bf73e78eac1dc4a527baf10fedc15a5a
NeedsCompilation: no
Packaged: 2026-01-22 19:26:34 UTC; root
Author: Michael Skinnider [aut, trl, cre],
  R. Greg Stacey [ctb],
  Nichollas Scott [ctb],
  Anders Kristensen [ctb],
  Leonard Foster [aut, led]
Maintainer: Michael Skinnider <michael.skinnider@msl.ubc.ca>
Built: R 4.6.0; ; 2026-01-22 19:29:07 UTC; windows
