Package: GeneNetworkBuilder
Type: Package
Version: 1.53.0
Title: GeneNetworkBuilder: a bioconductor package for building
        regulatory network using ChIP-chip/ChIP-seq data and Gene
        Expression Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jou@morgridge.org"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Maintainer: Jianhong Ou <jou@morgridge.org>
Imports: plyr, graph, htmlwidgets, Rgraphviz, RCy3, rjson, XML,
        methods, grDevices, stats, graphics
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13)
Suggests: RUnit, BiocGenerics, RBGL, knitr, shiny, STRINGdb, BiocStyle,
        magick, rmarkdown, org.Hs.eg.db
LinkingTo: Rcpp
Description: Appliation for discovering direct or indirect targets of
        transcription factors using ChIP-chip or ChIP-seq, and
        microarray or RNA-seq gene expression data. Inputting a list of
        genes of potential targets of one TF from ChIP-chip or
        ChIP-seq, and the gene expression results, GeneNetworkBuilder
        generates a regulatory network of the TF.
License: GPL (>= 2)
Lazyload: yes
LazyData: true
biocViews: Sequencing, Microarray, GraphAndNetwork
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/pak/sysreqs: make libicu-dev libxml2-dev libssl-dev python3
        libzmq3-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:11:49 UTC
RemoteUrl: https://github.com/bioc/GeneNetworkBuilder
RemoteRef: HEAD
RemoteSha: 98b73cc3a9acbf74b50f5d7d3a97e999f897170f
NeedsCompilation: yes
Packaged: 2026-01-22 18:46:51 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-01-22 18:48:59 UTC; windows
Archs: x64
