# Evaluating SNV-Induced Disruption of G-Quadruplex Structures

## Documentation for package ‘G4SNVHunter’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

checkSNV | Check the validity of SNVs
exportG4 | Export Predicted G4s to a File
exportMutG4 | Export G4s and Associated Variant Information to File
filterSNVImpact | Filter SNV Impact GRanges Object Based on User-Defined Thresholds
filterVarImpact | Filter Variant Impact G4 Object Based on User-Defined Thresholds
G4HunterDetect | Detect G4 Sequences Using the G4Hunter Algorithm
G4HunterScore | Calculate the G4Hunter Score for a Given Sequence
G4VarImpact | Evaluate the Impact of Variants (SNVs, Indels, MNVs) on G4 Sequences
loadSequence | Load Genome Sequences
loadVariant | Load Small Variant Data from VCF or MAF Files
plotG4Info | Plot Basic Statistics of G4s Detected by the G4HunterDetect Function
plotImpactedG4 | Sequence Logo of the G4 Sequence and Its Mutant Counterpart
plotImpactSeq | Visualize the variants in G4 sequence
plotSNVImpact | Plot the Impact of SNVs on G4Hunter Scores
plotVarImpact | Plot the Impact of Variants on G4 Formation
snp_gr | Single Nucleotide Polymorphisms GRanges Object
SNVImpactG4 | Evaluate the Impact of SNVs on G4 Sequences
snv_gr | Single Nucleotide Variant GRanges Object