EWCE-package            EWCE: Expression Weighted Celltype Enrichment
add_res_to_merging_list
                        Add to results to merging list
bin_columns_into_quantiles
                        'bin_columns_into_quantiles'
bin_specificity_into_quantiles
                        bin_specificity_into_quantiles
bootstrap_enrichment_test
                        Bootstrap cell type enrichment test
check_ewce_genelist_inputs
                        check_ewce_genelist_inputs
check_percent_hits      Get percentage of target cell type hits
controlled_geneset_enrichment
                        Celltype controlled geneset enrichment
ctd_to_sce              CellTypeDataset to SingleCellExperiment
drop_uninformative_genes
                        Drop uninformative genes
ewce_expression_data    Bootstrap cell type enrichment test for
                        transcriptome data
ewce_plot               Plot EWCE results
example_bootstrap_results
                        Example bootstrap enrichment results
example_transcriptome_results
                        Example bootstrap celltype enrichment test for
                        transcriptome data
filter_ctd_genes        Filter genes in a CellTypeDataset
filter_genes_without_1to1_homolog
                        filter_genes_without_1to1_homolog
filter_nonorthologs     Filter non-orthologs
fix_bad_hgnc_symbols    fix_bad_hgnc_symbols
fix_bad_mgi_symbols     fix_bad_mgi_symbols - Given an expression
                        matrix, wherein the rows are supposed to be MGI
                        symbols, find those symbols which are not
                        official MGI symbols, then check in the MGI
                        synonm database for whether they match to a
                        proper MGI symbol. Where a symbol is found to
                        be an aliases for a gene that is already in the
                        dataset, the combined reads are summed
                        together.
fix_celltype_names      Fix celltype names
generate_bootstrap_plots
                        Generate bootstrap plots
generate_bootstrap_plots_for_transcriptome
                        Generate bootstrap plots
generate_celltype_data
                        Generate CellTypeData (CTD) file
get_celltype_table      get_celltype_table
is_delayed_array        Assess whether an object is a DelayedArray.
is_matrix               Assess whether an object is a Matrix
is_sparse_matrix        Assess whether an object is a sparse matrix
list_species            List all species
load_rdata              'load_rdata'
merge_ctd               Merge multiple CellTypeDataset references
merge_sce               Merge multiple 'SingleCellExperiment' objects
merge_two_expfiles      Merge two exp files
merged_ewce             Multiple EWCE results from multiple studies
plot_ctd                Plot _CellTypeData_ metrics
prep.dendro             prep.dendro
sct_normalize           Normalize expression matrix
standardise_ctd         Convert a CellTypeDataset into standardized
                        format
