Package: EWCE
Type: Package
Title: Expression Weighted Celltype Enrichment
Version: 1.19.0
Authors@R: 
    c(person(given = "Alan",
           family = "Murphy",
           role = c("aut"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Brian",
           family = "Schilder",
           role = c("aut"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
     person(given="Hiranyamaya",
           family="Dash", 
           email = "hdash.work@gmail.com",
           role = c("cre"),
           comment = c(ORCID = "0009-0005-5514-505X")),
     person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180")))      
Description: Used to determine which cell types are enriched within
        gene lists. The package provides tools for testing enrichments
        within simple gene lists (such as human disease associated
        genes) and those resulting from differential expression
        studies. The package does not depend upon any particular Single
        Cell Transcriptome dataset and user defined datasets can be
        loaded in and used in the analyses.
URL: https://github.com/NathanSkene/EWCE
BugReports: https://github.com/NathanSkene/EWCE/issues
License: GPL-3
Depends: R (>= 4.2), RNOmni (>= 1.0)
VignetteBuilder: knitr
Imports: stats, utils, methods, ewceData (>= 1.7.1), dplyr, ggplot2,
        reshape2, limma, stringr, HGNChelper, Matrix, parallel,
        SingleCellExperiment, SummarizedExperiment, DelayedArray,
        BiocParallel, orthogene (>= 0.99.8), data.table
Suggests: rworkflows, remotes, knitr, BiocStyle, rmarkdown, testthat
        (>= 3.0.0), readxl, memoise, markdown, sctransform, DESeq2,
        MAST, DelayedMatrixStats, ggdendro, scales, patchwork
biocViews: GeneExpression, Transcription, DifferentialExpression,
        GeneSetEnrichment, Genetics, Microarray, mRNAMicroarray,
        OneChannel, RNASeq, BiomedicalInformatics, Proteomics,
        Visualization, FunctionalGenomics, SingleCell
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:08:07 UTC
RemoteUrl: https://github.com/bioc/EWCE
RemoteRef: HEAD
RemoteSha: 5ede728e1abfb43afe874af303a0972ada7670c9
NeedsCompilation: no
Packaged: 2026-01-09 21:17:21 UTC; root
Author: Alan Murphy [aut] (ORCID: <https://orcid.org/0000-0002-2487-8753>),
  Brian Schilder [aut] (ORCID: <https://orcid.org/0000-0001-5949-2191>),
  Hiranyamaya Dash [cre] (ORCID: <https://orcid.org/0009-0005-5514-505X>),
  Nathan Skene [aut] (ORCID: <https://orcid.org/0000-0002-6807-3180>)
Maintainer: Hiranyamaya Dash <hdash.work@gmail.com>
Built: R 4.6.0; ; 2026-01-09 21:23:55 UTC; windows
