# Helper Functions for LIBD Deconvolution

## Documentation for package ‘DeconvoBuddies’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

create_cell_colors | Create a cell color palette for plots
est_prop | Bisque Estimated Cell Type Proportions for DLPFC bulk RNA-seq data
est_prop_test | Test Estimated Cell Type Proportions
fetch_deconvo_data | Download Human DLPFC Deconvolution Data
findMarkers_1vAll | Calculate 1 vs. All standard fold change for each gene x cell type, wrapper function for 'scran::findMarkers()'.
get_mean_ratio | Get Mean Ratio for Each Gene x Cell Type
make_test_sce | Simulate a SingleCellExperiment for testing.
marker_stats_1vAll | 1vAll Marker Statistics example data
marker_test | Markers stats from sce_DLPFC_example
plot_composition_bar | Create barplot of average cell type composition
plot_gene_express | Plot the gene expression of a list of genes in a SCE object
plot_marker_express | Plot gene expression violin plots for top marker genes for one cell type
plot_marker_express_ALL | Plot the top marker genes for ALL cell types
plot_marker_express_List | Plot a nested list of genes as a multi-page pdf
RNAScope_prop | Cell Type Proportions estimated from RNAScope
rse_bulk_test | Test bulk rse dataset
sce_ab | Toy SCE object for testing