Package: DeconvoBuddies
Title: Helper Functions for LIBD Deconvolution
Version: 1.3.0
Date: 2025-07-28
Authors@R: 
    c(
    person(given = "Louise", family = "Huuki-Myers", role = c("aut", "cre"),
    email = "lahuuki@gmail.com", comment = c(ORCID = "0000-0001-5148-3602")),
    person("Leonardo", "Collado-Torres", role = c("ctb"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X"))
    )
Description: Funtions helpful for LIBD deconvolution project. Includes
        tools for marker finding with mean ratio, expression plotting,
        and plotting deconvolution results. Working to include DLPFC
        datasets.
License: Artistic-2.0
URL: https://github.com/lahuuki/DeconvoBuddies
BugReports: https://github.com/LieberInstitute/DeconvoBuddies/issues
biocViews: Software, SingleCell, RNASeq, GeneExpression,
        Transcriptomics, ExperimentHubSoftware
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: AnnotationHub, BiocFileCache, DelayedMatrixStats, dplyr,
        ExperimentHub, ggplot2, graphics, grDevices, MatrixGenerics,
        methods, purrr, rafalib, reshape2, S4Vectors, scran,
        SingleCellExperiment, spatialLIBD, stats, stringr,
        SummarizedExperiment, tibble, utils
Suggests: Biobase, BiocStyle, covr, HDF5Array, knitr, RColorBrewer,
        RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), tidyr,
        tidyverse
Config/testthat/edition: 3
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libharfbuzz-dev libmagick++-dev
        gsfonts libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libtiff-dev libwebp-dev libxml2-dev libssl-dev perl
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:35:32 UTC
RemoteUrl: https://github.com/bioc/DeconvoBuddies
RemoteRef: HEAD
RemoteSha: a72d7d5203e9b746a6660888bdfd27661b061978
NeedsCompilation: no
Packaged: 2026-01-09 21:22:49 UTC; root
Author: Louise Huuki-Myers [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5148-3602>),
  Leonardo Collado-Torres [ctb] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>)
Maintainer: Louise Huuki-Myers <lahuuki@gmail.com>
Built: R 4.6.0; ; 2026-01-09 21:28:21 UTC; windows
