# Generated by roxygen2: do not edit by hand

export(CiteFuse)
export(DEbubblePlot)
export(DEcomparisonPlot)
export(DEgenes)
export(DEgenesCross)
export(crossSampleDoublets)
export(geneADTnetwork)
export(igraphClustering)
export(importanceADT)
export(ligandReceptorTest)
export(normaliseExprs)
export(plotHTO)
export(preprocessing)
export(readFrom10X)
export(reducedDimSNF)
export(selectDEgenes)
export(spectralClustering)
export(visImportance)
export(visLigandReceptor)
export(visualiseDim)
export(visualiseExprs)
export(visualiseExprsList)
export(visualiseKNN)
export(withinSampleDoublets)
import(ggplot2)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,sourceCpp)
importFrom(Rtsne,Rtsne)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(compositions,clr)
importFrom(cowplot,axis_canvas)
importFrom(cowplot,insert_xaxis_grob)
importFrom(cowplot,insert_yaxis_grob)
importFrom(dbscan,dbscan)
importFrom(dbscan,sNN)
importFrom(ggraph,geom_node_circle)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggridges,geom_density_ridges2)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,arpack)
importFrom(igraph,cluster_edge_betweenness)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_label_prop)
importFrom(igraph,cluster_leading_eigen)
importFrom(igraph,cluster_louvain)
importFrom(igraph,cluster_optimal)
importFrom(igraph,cluster_spinglass)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,degree)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,layout_in_circle)
importFrom(methods,as)
importFrom(methods,is)
importFrom(mixtools,normalmixEM)
importFrom(pheatmap,pheatmap)
importFrom(randomForest,randomForest)
importFrom(reshape2,melt)
importFrom(rhdf5,h5read)
importFrom(rlang,.data)
importFrom(scran,getTopHVGs)
importFrom(scran,modelGeneVar)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,dnorm)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,uniroot)
importFrom(utils,combn)
importFrom(utils,read.delim)
importFrom(uwot,umap)
useDynLib(CiteFuse, .registration = TRUE)
