CITEseq_example         A subset of ECCITE-seq data (control)
CiteFuse                CiteFuse
DEbubblePlot            DEbubblePlot
DEcomparisonPlot        DEcomparisonPlot
DEgenes                 DEgenes
DEgenesCross            DEgenesCross
crossSampleDoublets     crossSampleDoublets
geneADTnetwork          geneADTnetwork
igraphClustering        igraphClustering
importanceADT           importanceADT
ligandReceptorTest      ligandReceptorTest
lr_pair_subset          A subset of Ligand Receptor Pairs
normaliseExprs          normaliseExprs
plotHTO                 plotHTO
plotHTOSingle           plotHTOSingle
preprocessing           A function to preprocess the list of expression
                        matrix
readFrom10X             readFrom10X
reducedDimSNF           reducedDimSNF
sce_control_subset      A SingleCellExperiment of ECCITE-seq data
sce_ctcl_subset         A SingleCellExperiment of ECCITE-seq data
selectDEgenes           selectDEgenes
spectralClustering      spectralClustering
visImportance           visImportance
visLigandReceptor       visLigandReceptor
visualiseDim            visualiseDim
visualiseExprs          visualiseExprs
visualiseExprsList      visualiseExprsList
visualiseKNN            visualiseKNN
withinSampleDoublets    withinSampleDoublets
