| .clipTranscript | Clip Transcript to Given Length |
| .fillReduce | Convert GRanges to Single Range |
| .mutateEach-method | Efficient Metadata Columns Mutation |
| .propagateMap | Propagate Transcript Merge Map |
| exportFASTA | Export Transcriptome as FASTA |
| exportGTF | Export GTF |
| exportMergeTable | Export Merge Table for Transcriptome |
| generateMergeTable | Generate Merge Table |
| generateMergeTable-method | Generate Merge Table |
| truncateTxome | Truncate Transcriptome |
| truncateTxome-method | Truncate Transcriptome |
| txdbToGRangesList | Convert TxDb object to GRangesList |