| methodsMerge | Integrate structural variations predicted by different methods |
| plotChromosome | Display the chromosome distribution of structural variations |
| plotRegion | Display structural variations in a specific genomic region |
| readBreakDancer | Read in the structural variations predicted by breakDancer |
| readCnvnator | Read in the structural variations predicted by CNVnator |
| readDelly | Read in the structural variations predicted by DELLY |
| readLumpy | Read in the structural variations predicted by Lumpy |
| readPindel | Read in the structural variations predicted by Pindel |
| readSoftSearch | Read in the structural variations predicted by SoftSearch |
| readSvseq | Read in the structural variations predicted by SVseq2 |
| svAnnotation | Annotation of structural variations |