A C D E F G H I L N O P Q R S T V W misc
| analysis.params | GEVA Generic Methods |
| analysis.params-method | GEVA Grouping Results |
| analysis.params-method | GEVA Grouped Summary-Variation Table |
| analysis.params-method | GEVA Input Data |
| analysis.params-method | GEVA Results Table |
| analysis.params-method | GEVA Summary-Variation Table |
| as.array.GEVAInput | GEVA Input Data |
| as.character.SVAttribute | Summary-Variation Attribute Field |
| as.data.frame.GEVAGroupSet | GEVA Grouping Results |
| as.data.frame.SVTable | Summary-Variation Table |
| as.expression.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
| as.expression.GEVAGroupSet | GEVA Grouping Results |
| as.expression.GEVAQuantiles | GEVA Quantiles Grouping Results |
| as.expression.GEVAResults | GEVA Results Table |
| as.expression.GEVASummary | GEVA Summary-Variation Table |
| as.list.TypedList | Type-strict List (TypedList-class) |
| as.matrix.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
| as.matrix.GEVASummary | GEVA Summary-Variation Table |
| as.matrix.SVTable | Summary-Variation Table |
| as.SVTable | GEVA Generic Methods |
| as.SVTable.data.frame | Summary-Variation Table |
| as.SVTable.GEVAGroupSet | GEVA Grouping Results |
| as.SVTable.GEVAQuantiles | GEVA Quantiles Grouping Results |
| as.SVTable.matrix | Summary-Variation Table |
| as.SVTable.SVTable | Summary-Variation Table |
| as.typed.list.list | Type-strict List (TypedList-class) |
| as.typed.list.TypedList | Type-strict List (TypedList-class) |
| as.typed.list.vector | Type-strict List (TypedList-class) |
| as.vector.SVAttribute | Summary-Variation Attribute Field |
| centroids | GEVA Generic Methods |
| centroids-method | GEVA Grouping Results |
| classification.table | GEVA Generic Methods |
| classification.table-method | GEVA Grouping Results |
| classification.table-method | GEVA Quantiles Grouping Results |
| classification.table<- | GEVA Generic Methods |
| classification.table<--method | GEVA Grouping Results |
| classification.table<--method | GEVA Quantiles Grouping Results |
| cluster.method | GEVA Generic Methods |
| cluster.method-method | GEVA Clustering Results |
| cluster.method-method | GEVA Grouping Results |
| cluster.method-method | GEVA Grouped Summary-Variation Table |
| cluster.method-method | GEVA Quantiles Grouping Results |
| color.values.GEVAGroupSet | GEVA Grouping Results |
| dim-method | GEVA Input Data |
| dim-method | GEVA Quantiles Grouping Results |
| dim-method | GEVA Results Table |
| dim-method | Summary-Variation Attribute Field |
| dim-method | Summary-Variation Table |
| dimnames-method | GEVA Input Data |
| dimnames-method | GEVA Results Table |
| dimnames-method | Summary-Variation Table |
| dimnames<--method | GEVA Input Data |
| elem.class | GEVA Generic Methods |
| elem.class-method | Type-strict List (TypedList-class) |
| elem.class<- | GEVA Generic Methods |
| elem.class<--method | Type-strict List (TypedList-class) |
| factors | GEVA Generic Methods |
| factors-method | GEVA Input Data |
| factors-method | GEVA Summary-Variation Table |
| factors<- | GEVA Generic Methods |
| factors<--method | GEVA Input Data |
| factors<--method | GEVA Summary-Variation Table |
| featureTable | GEVA Generic Methods |
| featureTable-method | GEVA Grouping Results |
| featureTable-method | GEVA Input Data |
| featureTable-method | GEVA Results Table |
| featureTable-method | GEVA Summary-Variation Table |
| featureTable<- | GEVA Generic Methods |
| featureTable<--method | GEVA Input Data |
| format.SVTable | Summary-Variation Table |
| generics | GEVA Generic Methods |
| get.distance.method | GEVA Generic Methods |
| get.summary.method | GEVA Generic Methods |
| get.summary.method.GEVASummary | GEVA Summary-Variation Table |
| get.variation.method | GEVA Generic Methods |
| get.variation.method.GEVASummary | GEVA Summary-Variation Table |
| geva.cluster | GEVA Cluster Analysis |
| geva.dcluster | GEVA Density Clustering |
| geva.finalize | Concatenating GEVA calculations into the final results |
| geva.hcluster | GEVA Hierarchical Clustering |
| geva.ideal.example | GEVA "Ideal" Example for Package Testing |
| geva.input.correct | GEVA Input Post-processing |
| geva.input.filter | GEVA Input Post-processing |
| geva.input.rename.rows | GEVA Input Post-processing |
| geva.merge.input | GEVA Input Processing and Merge |
| geva.quantiles | GEVA Quantiles Detection |
| geva.quick | All-In-One Function for GEVA Intermediate Procedures |
| geva.read.tables | GEVA Input Processing and Merge |
| geva.summarize | Summarizes the GEVAInput |
| GEVACluster-class | GEVA Clustering Results |
| GEVAGroupedSummary-class | GEVA Grouped Summary-Variation Table |
| GEVAGroupSet-class | GEVA Grouping Results |
| GEVAInput-class | GEVA Input Data |
| GEVAQuantiles-class | GEVA Quantiles Grouping Results |
| GEVAQuantilesAdjusted-class | GEVA Adjusted Quantiles Results |
| GEVAResults-class | GEVA Results Table |
| GEVASummary-class | GEVA Summary-Variation Table |
| group.rels | GEVA Generic Methods |
| group.rels-method | GEVA Adjusted Quantiles Results |
| groups | GEVA Generic Methods |
| groups-method | GEVA Grouping Results |
| groupsets | GEVA Generic Methods |
| groupsets-method | GEVA Grouped Summary-Variation Table |
| groupsets-method | GEVA Summary-Variation Table |
| groupsets<- | GEVA Generic Methods |
| groupsets<--method | GEVA Grouped Summary-Variation Table |
| groupsets<--method | GEVA Summary-Variation Table |
| head.GEVAInput | GEVA Input Data |
| head.GEVAResults | GEVA Results Table |
| head.SVTable | Summary-Variation Table |
| infolist | GEVA Generic Methods |
| infolist-method | GEVA Grouping Results |
| infolist-method | GEVA Input Data |
| infolist-method | GEVA Results Table |
| infolist-method | GEVA Summary-Variation Table |
| infolist<- | GEVA Generic Methods |
| infolist<--method | GEVA Grouping Results |
| infolist<--method | GEVA Input Data |
| infolist<--method | GEVA Summary-Variation Table |
| inputdata | GEVA Generic Methods |
| inputdata-method | GEVA Input Data |
| inputdata-method | GEVA Results Table |
| inputdata-method | GEVA Summary-Variation Table |
| inputnames | GEVA Generic Methods |
| inputnames-method | GEVA Input Data |
| inputnames-method | GEVA Summary-Variation Table |
| inputvalues | GEVA Generic Methods |
| inputvalues-method | GEVA Input Data |
| inputvalues-method | GEVA Results Table |
| inputvalues-method | GEVA Summary-Variation Table |
| inputweights | GEVA Generic Methods |
| inputweights-method | GEVA Input Data |
| inputweights-method | GEVA Results Table |
| inputweights-method | GEVA Summary-Variation Table |
| is.na.SVTable | Summary-Variation Table |
| length-method | GEVA Grouping Results |
| length-method | GEVA Input Data |
| length-method | GEVA Results Table |
| length-method | Summary-Variation Table |
| levels.GEVAGroupSet | GEVA Grouping Results |
| levels.GEVAInput | GEVA Input Data |
| levels.GEVAResults | GEVA Results Table |
| lines.GEVACluster | GEVA Clustering Results |
| lines.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
| lines.GEVAQuantiles | GEVA Quantiles Grouping Results |
| names-method | GEVA Grouping Results |
| names-method | GEVA Input Data |
| names-method | GEVA Results Table |
| names-method | Summary-Variation Attribute Field |
| names-method | Summary-Variation Table |
| offsets | GEVA Generic Methods |
| offsets-method | GEVA Grouping Results |
| options.cl.score.method | GEVA Cluster Analysis |
| options.cluster.method | GEVA Cluster Analysis |
| options.dcluster.method | GEVA Density Clustering |
| options.distance | GEVA Cluster Analysis |
| options.factoring.p.adjust | Concatenating GEVA calculations into the final results |
| options.hc.method | GEVA Hierarchical Clustering |
| options.hc.metric | GEVA Hierarchical Clustering |
| options.quantiles | GEVA Quantiles Detection |
| options.summary | Summarizes the GEVAInput |
| options.variation | Summarizes the GEVAInput |
| plot-method | GEVA Clustering Results |
| plot-method | GEVA Grouping Results |
| plot-method | GEVA Grouped Summary-Variation Table |
| plot-method | GEVA Input Data |
| plot-method | GEVA Quantiles Grouping Results |
| plot-method | GEVA Results Table |
| plot-method | GEVA Summary-Variation Table |
| plot-method | Summary-Variation Table |
| points.GEVAGroupedSummary | GEVA Grouped Summary-Variation Table |
| points.GEVAGroupSet | GEVA Grouping Results |
| points.GEVAResults | GEVA Results Table |
| points.SVTable | Summary-Variation Table |
| qareasizes | GEVA Generic Methods |
| qareasizes-method | GEVA Quantiles Grouping Results |
| qcount | GEVA Generic Methods |
| qcount-method | GEVA Quantiles Grouping Results |
| qindexes | GEVA Generic Methods |
| qindexes-method | GEVA Quantiles Grouping Results |
| quantiles | GEVA Generic Methods |
| quantiles-method | GEVA Grouped Summary-Variation Table |
| quantiles-method | GEVA Quantiles Grouping Results |
| quantiles-method | GEVA Results Table |
| quantiles-method | GEVA Summary-Variation Table |
| quantiles.method | GEVA Generic Methods |
| quantiles.method-method | GEVA Quantiles Grouping Results |
| results.table | GEVA Generic Methods |
| results.table-method | GEVA Results Table |
| scores | GEVA Generic Methods |
| scores-method | GEVA Grouping Results |
| show-method | GEVA Clustering Results |
| show-method | GEVA Grouping Results |
| show-method | GEVA Grouped Summary-Variation Table |
| show-method | GEVA Input Data |
| show-method | GEVA Quantiles Grouping Results |
| show-method | GEVA Adjusted Quantiles Results |
| show-method | GEVA Results Table |
| show-method | GEVA Summary-Variation Table |
| show-method | Summary-Variation Attribute Field |
| show-method | Summary-Variation Table |
| show-method | Type-strict List (TypedList-class) |
| summary.SVAttribute | Summary-Variation Attribute Field |
| summary.SVTable | Summary-Variation Table |
| sv | GEVA Generic Methods |
| sv-method | GEVA Grouping Results |
| sv-method | GEVA Results Table |
| sv-method | Summary-Variation Attribute Field |
| sv-method | Summary-Variation Table |
| sv.data | GEVA Generic Methods |
| sv.data-method | GEVA Grouping Results |
| sv.data-method | GEVA Results Table |
| sv.data-method | Summary-Variation Attribute Field |
| sv.data-method | Summary-Variation Table |
| sv.scores | GEVA Generic Methods |
| sv.scores-method | GEVA Quantiles Grouping Results |
| svattr | GEVA Generic Methods |
| svattr-method | Summary-Variation Attribute Field |
| SVAttribute | Summary-Variation Attribute Field |
| SVAttribute-class | Summary-Variation Attribute Field |
| SVChrAttribute | Summary-Variation Attribute Field |
| SVChrAttribute-class | Summary-Variation Attribute Field |
| SVIntAttribute | Summary-Variation Attribute Field |
| SVIntAttribute-class | Summary-Variation Attribute Field |
| SVNumAttribute | Summary-Variation Attribute Field |
| SVNumAttribute-class | Summary-Variation Attribute Field |
| SVTable | Summary-Variation Table |
| svtable | Summary-Variation Table |
| SVTable-class | Summary-Variation Table |
| tail.GEVAInput | GEVA Input Data |
| tail.SVTable | Summary-Variation Table |
| top.genes | Top Results from GEVA |
| typed.list | Type-strict List (TypedList-class) |
| TypedList-class | Type-strict List (TypedList-class) |
| variation | GEVA Generic Methods |
| variation.SVAttribute | Summary-Variation Attribute Field |
| variation.SVTable | Summary-Variation Table |
| with.SVTable | Summary-Variation Table |
| $-method | GEVA Results Table |
| $-method | Summary-Variation Attribute Field |
| $-method | Summary-Variation Table |
| [-method | GEVA Input Data |
| [-method | GEVA Quantiles Grouping Results |
| [-method | GEVA Results Table |
| [-method | Summary-Variation Attribute Field |
| [-method | Summary-Variation Table |
| [-method | Type-strict List (TypedList-class) |
| [<--method | Type-strict List (TypedList-class) |