| clst-package | Classification by local similarity threshold | 
| actino | Actinomyces data set | 
| bvseqs | BV reference set. | 
| classifier | classify | 
| classify | classify | 
| classifyIter | classify | 
| clst | Classification by local similarity threshold | 
| findThreshold | findThreshold | 
| partition | findThreshold | 
| plotDistances | Visualize results of 'link{findThreshold}' | 
| plotMutinfo | Visualize results of 'link{findThreshold}' | 
| printClst | Print a summary of the classifier output. | 
| pull | classify | 
| pullTab | classify | 
| scaleDistPlot | Annotated multidimensional scaling plots. | 
| strep | Streptococcus data set. |