| clu | clu |
| cluster2outlier | cluster2outlier |
| createFluo | createFluo |
| defineLocClusters | defineLocClusters |
| estimates | estimates |
| estimates.2 | estimates.2 |
| files | files |
| FluoSelection_byRun | FluoSelection_byRun |
| Fluo_adjustment | Fluo_adjustment |
| Fluo_CV_modeling | Fluo_CV_modeling |
| Fluo_CV_prep | Fluo_CV_prep |
| Fluo_inspection | Fluo_inspection |
| Fluo_modeling | Fluo_modeling |
| Fluo_ordering | Fluo_ordering |
| getFluo | getFluo |
| getFluo_byRun | getFluo_byRun |
| LocationMatrix | LocationMatrix |
| pathEstimator | pathEstimator |
| readFiles | readFiles |
| Results | Results |
| simcells | simcells |
| spotEstimator | spotEstimator |
| step1 | step1 |
| step2 | step2 |
| step2.1 | step2.1 |
| step3 | step3 |
| step3.1 | step3.1 |
| step4 | step4 |
| steps2_4 | steps2_4 |