HDCytoData
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HDCytoData.
Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
Bioconductor version: 3.8
Data package containing a collection of high-dimensional cytometry benchmark datasets saved in SummarizedExperiment and flowSet Bioconductor object formats, including row and column metadata describing samples, cell populations (clusters), and protein markers.
Author: Lukas M. Weber [aut, cre], Charlotte Soneson [aut]
Maintainer: Lukas M. Weber <lukmweber at gmail.com>
citation("HDCytoData")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HDCytoData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HDCytoData")| HDCytoData data package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, FlowCytometryData, Homo_sapiens_Data, ImmunoOncologyData |
| Version | 1.2.11 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub, SummarizedExperiment, flowCore |
| Imports | utils, methods |
| System Requirements | |
| URL | https://github.com/lmweber/HDCytoData |
| Bug Reports | https://github.com/lmweber/HDCytoData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, FlowSOM, Rtsne, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | diffcyt |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HDCytoData_1.2.11.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HDCytoData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HDCytoData |
| Package Short Url | https://bioconductor.org/packages/HDCytoData/ |
| Package Downloads Report | Download Stats |