pathprint
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.
Pathway fingerprinting for analysis of gene expression arrays
Bioconductor version: 3.8
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler, Sokratis Kariotis
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
citation("pathprint")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathprint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprint")| pathprint | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, KEGG, Reactome, Software, Transcription |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL |
| Depends | R (>= 3.4) |
| Imports | stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | ALL, GEOquery, pathprintGEOData, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pathprintGEOData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathprint_1.12.0.tar.gz |
| Windows Binary | pathprint_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | pathprint_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathprint |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathprint |
| Bioc Package Browser | https://code.bioconductor.org/browse/pathprint/ |
| Package Short Url | https://bioconductor.org/packages/pathprint/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |