multiOmicsViz
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see multiOmicsViz.
Plot the effect of one omics data on other omics data along the chromosome
Bioconductor version: 3.8
Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
citation("multiOmicsViz")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiOmicsViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiOmicsViz")| multiOmicsViz | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, SystemsBiology, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | LGPL |
| Depends | R (>= 3.3.2) |
| Imports | methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiOmicsViz_1.6.0.tar.gz |
| Windows Binary | multiOmicsViz_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | multiOmicsViz_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiOmicsViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiOmicsViz |
| Bioc Package Browser | https://code.bioconductor.org/browse/multiOmicsViz/ |
| Package Short Url | https://bioconductor.org/packages/multiOmicsViz/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |