motifRG
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see motifRG.
A package for discriminative motif discovery, designed for high throughput sequencing dataset
Bioconductor version: 3.8
Tools for discriminative motif discovery using regression methods
Author: Zizhen Yao
Maintainer: Zizhen Yao <yzizhen at fhcrc.org>
Citation (from within R, enter
citation("motifRG")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("motifRG")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("motifRG")| motifRG: regression-based discriminative motif discovery | R Script | |
| Reference Manual |
Details
| biocViews | MotifDiscovery, Software, Transcription |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19 |
| Imports | Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | RCAS |
| Imports Me | |
| Suggests Me | universalmotif |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | motifRG_1.26.0.tar.gz |
| Windows Binary | motifRG_1.26.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | motifRG_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/motifRG |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/motifRG |
| Bioc Package Browser | https://code.bioconductor.org/browse/motifRG/ |
| Package Short Url | https://bioconductor.org/packages/motifRG/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |