CHARGE
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CHARGE.
CHARGE: CHromosome Assessment in R from Gene Expression data
Bioconductor version: 3.8
Identifies genomic duplications or deletions from gene expression data.
Author: Benjamin Mayne
Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>
Citation (from within R, enter
citation("CHARGE")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CHARGE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CHARGE")| CHARGE_Example | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, GeneExpression, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-2 |
| Depends | R (>= 3.5), GenomicRanges, methods |
| Imports | SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | roxygen2, EnsDb.Hsapiens.v86 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CHARGE_1.2.0.tar.gz |
| Windows Binary | CHARGE_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | CHARGE_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CHARGE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CHARGE |
| Bioc Package Browser | https://code.bioconductor.org/browse/CHARGE/ |
| Package Short Url | https://bioconductor.org/packages/CHARGE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |