roma

DOI: 10.18129/B9.bioc.roma    

This is the development version of roma; to use it, please install the devel version of Bioconductor.

R wrapper for the OMA REST API

Bioconductor version: Development (3.7)

A package for the orthology prediction data download from OMA database.

Author: Klara Kaleb

Maintainer: Klara Kaleb <klarakaleb at outlook.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("roma")

Documentation

HTML	R Script	Exploring Hierarchical orthologous groups with roma
HTML	R Script	Exploring Taxonomic trees with roma
HTML	R Script	Get started with Roma
HTML	R Script	Sequence Mapping with roma
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software
Version	0.99.11
License	GPL-2
Depends	R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports	utils, ape, Biostrings, GenomicRanges, IRanges, methods, ggtree
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	roma_0.99.11.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	roma_0.99.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/roma
Package Short Url	http://bioconductor.org/packages/roma/
Package Downloads Report	Download Stats