Changes in version 2.0.6 (2015-06-15)

	o Fixed another bug resulting from checking whether all co-analyzed bams were mapped to the same reference genome

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Changes in version 2.0.5 (2015-06-10)

	o Fixed an error resulting from checking whether all co-analyzed bams were mapped to the same reference genome

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Changes in version 2.0.4 (2015-06-05)

	o Fixed an error in plotCNA leading to mixing of chromosomes during plotting

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Changes in version 2.0.3 (2015-05-06)

	o Included MAD-values in CopywriteR log file

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Changes in version 2.0.2 (2015-04-24)

	o Fixed the bug that under certain circumstances error messages are thrown that .bam files are not coordinate sorted

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Changes in version 2.0.1 (2015-04-18)

	o Implemented resetting the original work directory upon exit of CopywriteR functions
	o Corrected R dependency to version 3.2
	o Updated DESCRIPTION file
	o Fixed bug resulting in failure to calculate loesses

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RELEASE (version 2.0)

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Changes in version 1.99.4 (2015-04-08)

	o Fixed bug related to logging when .bam are not indexed

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Changes in version 1.99.3 (2015-04-06)

	o Fixed bug related to testing of sort mode of .bam files 

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Changes in version 1.99.2 (2015-03-21)

	o Provided vignette that allows R CMD CHECK --no-build-vignettes in <5 min
	o Fixed minor bug affecting runs in which not all samples are analyzed by CopywriteR function
	o Included a test for sorting of .bam files
	o Improved error messages
	o Fixed minor bug affecting plotting of samples
	o Fixed minor bug causing error when processing >100 samples simultaneously
	o Added support for capture regions bed files lacking the correct chromosome name prefix
	o Fixed minor bug affecting read count statistics on single-sample analysis

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Changes in version 1.99.0 (2015-03-05)

	o Released new version
	o Improved the speed of the package
	o Implemented logging with the futile.logger package
	o Replaced direct slot or field access with the use of accessor functions
	o Implemented text wrapping
	o Replaced the use of bed-file format with GRanges objects
	o Created annotation and experiment packages
	o Addressed all NOTES upon R CMD CHECK
	o Restore options upon exit
	o Adjusted version numbering to 1.99.0
	o Implemented BiocParallel for parallel computing
	o Changed name from ENCODER to CopywriteR
	o Shortened lines to 80 characters
	o Added NEWS file
	o Changed F to FALSE
	o Changed T to TRUE
	o Added biocViews
	o Changed version to 0.99.0