To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anamiR")
In most cases, you don't need to download the package archive at all.
anamiR
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see anamiR.
An integrated analysis package of miRNA and mRNA expression data
Bioconductor version: 3.4
This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.
Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>
Citation (from within R,
enter citation("anamiR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anamiR")
Documentation
| HTML | R Script | Introduction to anamiR |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.1), SummarizedExperiment(>= 1.1.6) |
| Imports | stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots |
| LinkingTo | |
| Suggests | knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/AllenTiTaiWang/anamiR |
| BugReports | https://github.com/AllenTiTaiWang/anamiR/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | anamiR_1.0.1.tar.gz |
| Windows Binary | anamiR_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | anamiR_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/anamiR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/anamiR/ |
| Package Downloads Report | Download Stats |
Documentation »
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