To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

In most cases, you don't need to download the package archive at all.

affylmGUI

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma package with Affymetrix microarrays

Bioconductor version: 3.4

A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]

Maintainer: Yifang Hu <hu at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>, Keith Satterley <keith at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

PDF	R Script	affylmGUI Vignette
PDF		Extracting affy and limma objects from affylmGUI files
HTML		about.html
HTML		CustMenu.html
HTML		index.html
HTML		windowsFocus.html
PDF		Reference Manual

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version	1.48.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 12 years)
License	GPL (>=2)
Depends
Imports	limma, tcltk, affy, BiocInstaller, affyio, tkrplot, affyPLM, R2HTML, xtable, gcrma, AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me	oneChannelGUI
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	affylmGUI_1.48.0.tar.gz
Windows Binary	affylmGUI_1.48.2.zip
Mac OS X 10.9 (Mavericks)	affylmGUI_1.48.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/affylmGUI/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/affylmGUI/
Package Downloads Report	Download Stats

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