SNPRelate-package       Parallel Computing Toolset for genome-wide
                        association studies
hapmap_geno             SNP genotypes of HapMap samples
snpgdsBED2GDS           Conversion from PLINK BED to GDS
snpgdsCombineGeno       Merge SNP datasets
snpgdsCreateGeno        Create a SNP genotype dataset from a matrix
snpgdsCreateGenoSet     Create a SNP genotype dataset from a GDS file
snpgdsCutTree           Determine clusters of individuals
snpgdsDiss              Individual dissimilarity analysis
snpgdsDrawTree          Draw a dendrogram
snpgdsErrMsg            Get the last error information
snpgdsExampleFileName   Example GDS file
snpgdsGDS2BED           Conversion from GDS to PLINK BED
snpgdsGDS2Eigen         Conversion from GDS to Eigen (EIGENSTRAT)
snpgdsGDS2PED           Conversion from GDS to PED
snpgdsGetGeno           To get a genotype matrix
snpgdsHCluster          Hierarchical cluster analysis
snpgdsIBDKING           KING method of moment for the
                        identity-by-descent (IBD) analysis
snpgdsIBDMLE            Maximum likelihood estimation (MLE) for the
                        Identity-By-Descent (IBD) Analysis
snpgdsIBDMLELogLik      Log likelihood for MLE method in the
                        Identity-By-Descent (IBD) Analysis
snpgdsIBDMoM            PLINK method of moment (MoM) for the
                        Identity-By-Descent (IBD) Analysis
snpgdsIBDSelection      Get a table of IBD coefficients
snpgdsIBS               Identity-By-State (IBS) proportion
snpgdsIBSNum            The numbers of Identity-By-State (IBS) SNPs
snpgdsIndInb            Individual Inbreeding Coefficients
snpgdsIndInbCoef        Individual Inbreeding Coefficient
snpgdsLDMat             Linkage Disequilibrium (LD) analysis
snpgdsLDpair            Linkage Disequilibrium (LD)
snpgdsLDpruning         Linkage Disequilibrium (LD) based SNP pruning
snpgdsOption            Option settings: chromosome coding, etc
snpgdsPCA               Principal Component Analysis (PCA) on SNP
                        genotype data
snpgdsPCACorr           SNP correlation in principal component analysis
snpgdsPCASNPLoading     SNP loadings in principal component analysis
snpgdsPCASampLoading    Project individuals onto existing principal
                        component axes
snpgdsPairIBD           Calculate Identity-By-Descent (IBD)
                        Coefficients
snpgdsPairIBDMLELogLik
                        Log likelihood for MLE method in the
                        Identity-By-Descent (IBD) Analysis
snpgdsSNPList           Create a SNP list object
snpgdsSNPListClass      the class of a SNP list
snpgdsSNPListIntersect
                        Get a common SNP list between two SNP list
                        objects
snpgdsSNPListStrand     Switch allele strand.
snpgdsSNPRateFreq       Allele Frequency, Minor Allele Frequency,
                        Missing Rate of SNPs
snpgdsSampMissrate      Missing Rate of Samples
snpgdsSelectSNP         SNP selection
snpgdsSummary           Summary of GDS genotype file
snpgdsVCF2GDS           Reformat a VCF file
