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- Resourcerer (development version)
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Resourcerer")
In most cases, you don't need to download the package archive at all.
Resourcerer
This is the development version of Resourcerer; for the stable release version, see Resourcerer.
Reads annotation data from TIGR Resourcerer or convert the annotation data into Bioconductor data pacakge.
Bioconductor version: Development (3.0)
This package allows user either to read an annotation data file from TIGR Resourcerer as a matrix or convert the file into a Bioconductor annotation data package using the AnnBuilder package.
Author: Jianhua Zhang
Maintainer: Jianhua Zhang <jzhang at jimmy.harvard.edu>
Citation (from within R,
enter citation("Resourcerer")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Resourcerer")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Resourcerer")
| R Script | Resourcerer Resourcerer | |
| Reference Manual |
Details
| biocViews | Annotation, Microarray, Software |
| Version | 1.39.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier |
| License | LGPL |
| Depends | R (>= 1.9.0), Biobase, AnnotationDbi(>= 1.4.0) |
| Imports | |
| Suggests | human.db0, mouse.db0, rat.db0 |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Resourcerer_1.39.0.tar.gz |
| Windows Binary | Resourcerer_1.39.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | Resourcerer_1.39.0.tgz |
| Mac OS X 10.9 (Mavericks) | Resourcerer_1.39.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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